Factsheet for GSMUA_Achr4P20270_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P11420_001
GSMUA_Achr3P19230_001
GSMUA_Achr6P18240_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34110.1	GSMUA_Achr2P11420_001	AT2G43970.1	21798944
AT4G34110.1	GSMUA_Achr3P19230_001	AT2G43970.1	21798944
AT4G34110.1	GSMUA_Achr6P18240_001	AT2G43970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P00990_001	Banana	cytosol	72.32	71.43
KRH70673	Soybean	nucleus	71.7	71.14
VIT_18s0001g10170.t01	Wine grape	cytosol	70.76	71.09
GSMUA_Achr4P09890_001	Banana	cytosol	71.7	70.71
KRH50336	Soybean	cytosol	71.23	70.35
TraesCS7D01G287900.1	Wheat	cytosol	69.05	69.59
Os09t0115400-01	Rice	nucleus	71.23	69.18
VIT_07s0031g00210.t01	Wine grape	cytosol	70.3	69.11
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	70.92	69.09
GSMUA_AchrUn_...	Banana	cytosol	69.98	69.02
TraesCS5B01G159400.1	Wheat	cytosol	69.67	68.82
TraesCS5D01G167000.1	Wheat	nucleus, unclear	69.52	68.66
TraesCS5A01G161800.2	Wheat	nucleus	69.52	68.66
KRH15385	Soybean	nucleus	69.36	68.4
TraesCS7A01G288700.1	Wheat	nucleus	69.98	67.98
KRH05656	Soybean	endoplasmic reticulum, nucleus	68.74	67.58
Zm00001d005276_P007	Maize	cytosol	68.43	67.28
KXG35258	Sorghum	cytosol	68.58	67.23
Zm00001d019824_P004	Maize	cytosol	67.65	66.31
KRH52023	Soybean	cytosol, endoplasmic reticulum	64.39	65.71
KRH61326	Soybean	cytosol, endoplasmic reticulum	63.3	64.6
CDY54068	Canola	cytosol	64.7	63.71
Bra013104.1-P	Field mustard	cytosol	60.96	63.64
Bra018797.1-P	Field mustard	cytosol	64.54	63.55
CDY51045	Canola	cytosol	64.54	63.55
CDY67364	Canola	nucleus	28.93	63.48
HORVU5Hr1G050560.1	Barley	plastid	69.21	63.39
CDX89664	Canola	cytosol	60.5	63.35
CDY62723	Canola	cytosol	60.65	63.21
Bra034603.1-P	Field mustard	cytosol, plastid	60.65	63.0
AT4G34110.1	Thale cress	cytosol	61.59	62.96
CDY51957	Canola	cytosol, plastid	60.5	62.84
TraesCS7B01G182800.3	Wheat	cytosol	65.94	62.81
Bra011488.1-P	Field mustard	cytosol, plastid	59.88	62.81
HORVU7Hr1G063970.1	Barley	cytosol, nucleus, plastid	69.83	62.71
CDY67365	Canola	plastid	28.46	62.67
CDX75397	Canola	nucleus, plastid	60.03	62.66
CDX71223	Canola	cytosol	62.05	62.54
CDX69025	Canola	nucleus, plastid	59.41	62.52
AT1G49760.1	Thale cress	cytosol	65.01	62.3
GSMUA_Achr7P05430_001	Banana	nucleus	85.54	60.84
CDY36634	Canola	nucleus	60.81	60.25
Bra015220.1-P	Field mustard	cytosol	53.97	60.03
CDX79296	Canola	plastid	16.17	56.83
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	69.52	56.8
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	57.08	56.64
PGSC0003DMT400012508	Potato	nucleus	10.42	54.03
GSMUA_Achr5P24940_001	Banana	plastid	51.17	49.4
Bra022413.1-P	Field mustard	cytosol	29.86	43.05
CDX92325	Canola	nucleus	20.06	40.06
GSMUA_Achr4P00840_001	Banana	cytosol	27.99	37.19
GSMUA_Achr9P10860_001	Banana	cytosol	39.66	35.66
CDX91689	Canola	nucleus	16.17	34.1
GSMUA_Achr5P20140_001	Banana	nucleus	16.33	28.69
GSMUA_Achr6P10190_001	Banana	nucleus	13.84	28.43
GSMUA_Achr10P...	Banana	nucleus	13.69	28.03
GSMUA_Achr9P15210_001	Banana	nucleus	13.53	27.88
GSMUA_Achr6P29410_001	Banana	nucleus	14.0	27.44
GSMUA_Achr3P06840_001	Banana	nucleus	13.22	27.24
GSMUA_Achr9P24980_001	Banana	cytosol	13.84	26.89
GSMUA_Achr8P03580_001	Banana	cytosol, mitochondrion, nucleus	15.71	24.82
GSMUA_Achr3P01720_001	Banana	mitochondrion	14.77	23.57
GSMUA_Achr8P31320_001	Banana	nucleus	14.62	23.5
GSMUA_Achr9P14120_001	Banana	nucleus	14.77	23.4
GSMUA_Achr10P...	Banana	nucleus	15.71	23.27
GSMUA_Achr6P11660_001	Banana	mitochondrion	15.24	23.17
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	15.09	22.35
GSMUA_Achr11P...	Banana	nucleus	15.24	22.07
GSMUA_Achr10P...	Banana	mitochondrion	14.46	21.88
GSMUA_Achr6P09470_001	Banana	nucleus	4.35	19.05
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	14.62	18.95
Solyc06g062680.1.1	Tomato	cytosol	15.24	18.46

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
EnsemblPlantsGene:GSMUA_Achr4G20270_001	EnsemblPlants:GSMUA_Achr4P20270_001	EnsemblPlants:GSMUA_Achr4T20270_001	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677
UniProt:M0SQJ0	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076
PFAM:PF00658	PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF349	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928
SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI000294B791	SEG:seg	:	:

Description

Polyadenylate-binding protein 2 [Source:GMGC_GENE;Acc:GSMUA_Achr4G20270_001]

Coordinates

chr4:-:20942416..20948211

Molecular Weight (calculated)

70148.7 Da

IEP (calculated)

6.426

GRAVY (calculated)

-0.391

Length

643 amino acids

Sequence
(BLAST)

001: MAQVPLQPQA AVPGPAEGGG GAQFSSTSLY VGDLDPGVTD AQLYDVFSQI GAVVSVRVCR DMNTRFSLGY AYVNYNDAAD AARALEVLNF MPLNGKTIRI
101: MHSNRDPSTR RSGTANIFIK NLDKCIDNKA LYDTFSAFGN ILSCKVATDA SGQSKGYGFV QFEQDDAAQN AIENLNGMLL NDKKVFVGPF IRKQERENAA
201: SNITFSNVFV KNLSESTTED TLQEVFGEFG KITSCIVMRG EDGKSKCFGF VNFENPDEAA QAVQELNGKK FDDKEWYVGR AQKKSEREQE LKEKFDQSKQ
301: ESSEKLEGVN LYLKNLDDNI GDDNLRELFS GFGAIASCKV VRDKNGVSKG SGFVVFQSPD HASQALLEMN GKMIGNKPLY VALAQRKEDR RARLQAQFSQ
401: MRPVVIPPSV APRVPLYPPG APGLGQPLFY GQPPALVPPQ PGFGFPHPLV TGMRPGAAPF PNFFIPMAQQ GQQAQRPGGR RAGAGPLQLT QQHPMQMIQQ
501: QMLPRGGRPY RYPPGRGMPE VGNPEGMFSP PYDMGGMPAR HAGMSQPVPV GELTSALANA TPEQQRLMLG ESLYPLVDQL EHGYAAKVTG MLLEMDQNEV
601: LHLLESPEAL QAKVVEAMGV LRSVVQQQQV ANRLAGLSLN DVS

Best Arabidopsis Sequence Match ( AT1G49760.1 )
(BLAST)

001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P

Arabidopsis Description

PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.