Factsheet for VIT_18s0001g10170.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g10210.t01	Wine grape	cytosol	9.38	95.24
VIT_18s0001g10220.t01	Wine grape	cytosol	14.69	94.0
PGSC0003DMT400039842	Potato	cytosol	80.31	85.67
VIT_07s0031g00210.t01	Wine grape	cytosol	84.84	83.03
Solyc12g088720.1.1	Tomato	plastid	85.31	81.98
KRH15385	Soybean	nucleus	82.5	80.98
KRH05656	Soybean	endoplasmic reticulum, nucleus	82.03	80.28
KRH52023	Soybean	cytosol, endoplasmic reticulum	75.31	76.51
GSMUA_Achr9P00990_001	Banana	cytosol	77.34	76.04
GSMUA_Achr4P09890_001	Banana	cytosol	76.56	75.15
KRH61326	Soybean	cytosol, endoplasmic reticulum	73.12	74.29
GSMUA_AchrUn_...	Banana	cytosol	75.31	73.93
HORVU2Hr1G087390.3	Barley	cytosol, mitochondrion, nucleus	70.16	73.49
Os04t0504800-01	Rice	plasma membrane	74.84	72.69
Os09t0115400-01	Rice	nucleus	73.44	71.0
GSMUA_Achr4P20270_001	Banana	cytosol	71.09	70.76
Zm00001d025801_P005	Maize	cytosol, plastid	72.03	70.71
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	72.03	70.71
TraesCS7D01G287900.1	Wheat	cytosol	69.84	70.06
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	72.19	70.0
TraesCS2A01G359000.1	Wheat	cytosol	72.34	69.62
EES12460	Sorghum	plastid	72.03	69.43
TraesCS2D01G358000.1	Wheat	cytosol	72.03	69.43
TraesCS2B01G378400.1	Wheat	nucleus	72.03	69.32
TraesCS5B01G159400.1	Wheat	cytosol	70.47	69.28
KXG35258	Sorghum	cytosol	70.94	69.21
TraesCS5A01G161800.2	Wheat	nucleus	70.31	69.12
TraesCS5D01G167000.1	Wheat	nucleus, unclear	70.31	69.12
VIT_18s0001g10190.t01	Wine grape	cytosol, mitochondrion	13.44	68.8
Zm00001d005276_P007	Maize	cytosol	70.0	68.5
TraesCS7A01G288700.1	Wheat	nucleus	70.62	68.28
Zm00001d019824_P004	Maize	cytosol	69.53	67.84
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	81.56	66.33
HORVU5Hr1G050560.1	Barley	plastid	70.47	64.25
HORVU7Hr1G063970.1	Barley	cytosol, nucleus, plastid	70.62	63.13
TraesCS7B01G182800.3	Wheat	cytosol	65.62	62.22
VIT_18s0001g02490.t01	Wine grape	plastid	63.44	61.61
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	58.59	57.87
GSMUA_Achr7P05430_001	Banana	nucleus	74.38	52.65
VIT_09s0002g03160.t01	Wine grape	cytosol, nucleus, plastid, vacuole	33.28	44.75
VIT_08s0007g04380.t01	Wine grape	cytosol	43.44	43.85
CDX91689	Canola	nucleus	17.34	36.39
VIT_04s0023g01470.t01	Wine grape	nucleus	18.12	31.1
VIT_04s0008g02930.t01	Wine grape	nucleus	15.47	24.94
VIT_06s0004g02040.t01	Wine grape	nucleus	17.19	24.72
VIT_09s0002g00880.t01	Wine grape	mitochondrion, nucleus	15.31	23.33
VIT_11s0016g00700.t01	Wine grape	mitochondrion, nucleus	15.16	22.99
VIT_03s0063g00850.t01	Wine grape	nucleus	14.84	22.95
VIT_18s0001g11080.t01	Wine grape	nucleus	14.84	22.73
VIT_19s0090g00280.t01	Wine grape	nucleus	15.78	21.81
VIT_04s0043g01000.t01	Wine grape	cytosol, extracellular, mitochondrion	4.38	19.18

Protein Annotations

Gene3D:1.10.1900.10	EntrezGene:100255846	wikigene:100255846	MapMan:17.4.2.5	Gene3D:3.30.70.330	UniProt:A5B5N0
EMBL:AM447494	ProteinID:CAN76464	ProteinID:CAN76464.1	ProteinID:CCB45818	ProteinID:CCB45818.1	EMBL:FN595227
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	EntrezGene:LOC100255846
wikigene:LOC100255846	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076
PFAM:PF00658	PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF349	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928
SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI0001520472	ArrayExpress:VIT_18s0001g10170	EnsemblPlantsGene:VIT_18s0001g10170	EnsemblPlants:VIT_18s0001g10170.t01
unigene:Vvi.7872	RefSeq:XP_002284923	RefSeq:XP_002284923.1	SEG:seg	:	:

Description

Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A5B5N0]

Coordinates

chr18:+:8518208..8531300

Molecular Weight (calculated)

70149.0 Da

IEP (calculated)

6.940

GRAVY (calculated)

-0.382

Length

640 amino acids

Sequence
(BLAST)

001: MAQIQAAVAG PNGVANTASL YVGDLDVNIT DSQLYDLFIQ AGQVLSVRVC RDLSTRRSLG YGYVNYSNPQ DAARALDLLN FTPLNGKPIR IMYSHRDPSI
101: RKSGTANIFI KNLDKSIDNK ALHDTFSAFG NILSCKIATD PSGQSKGYGF VQFDNEESAQ NAIDKLNGML INDKQVYVGQ FLRKQERETA LNKTKFNNVY
201: VKNLSESTTE EDLKNIFGEF GIITSVVVMR DGDGKSKCFG FVNFENADDA AEAVEALNGK KFDEKEWYVG KAQKKYEREL ELKGRFEQSM KEVVDKFQGV
301: NLYIKNLDDS IGDDKLKELF SEFGTITSCK VMRDPSGISR GSGFVAFSTS EEASRALTEM NGKMVVSKPL YVALAQRKEE RRARLQAQFS QMRPVSMAPS
401: VAPRMPMYPP GAPGLGQQLF YGQGPPAIIP PQAGFGYQQQ LVPGMRPGGA PMPNFFVPLV QQGQQGQRPG GRRGAGPVQQ NQQPVPLMQQ QMLPRGGRVY
501: RYPPGRNMPD VPMPGVAGGM LSIPYDMGGV PLRDAAIGQP MPISALASAL ANATPDQQRT MLGESLYPLV DQLEHEMAAK VTGMLLEMDQ TEVLHLLESP
601: EALKSKVAEA MDVLRNVAQQ QANSPTEQLA SLSLNDSLVP

Best Arabidopsis Sequence Match ( AT1G49760.1 )
(BLAST)

001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P

Arabidopsis Description

PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.