Factsheet for VIT_04s0008g02930.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61952	Soybean	mitochondrion	84.13	78.59
KRH52613	Soybean	nucleus	85.64	78.16
GSMUA_Achr9P14120_001	Banana	nucleus	78.84	77.09
VIT_09s0002g00880.t01	Wine grape	mitochondrion, nucleus	68.51	64.76
VIT_11s0016g00700.t01	Wine grape	mitochondrion, nucleus	67.25	63.27
TraesCS7A01G252200.1	Wheat	mitochondrion, nucleus	70.03	62.19
TraesCS7B01G138700.1	Wheat	mitochondrion, nucleus	70.03	62.19
EES15356	Sorghum	nucleus	69.77	61.97
TraesCS7D01G250300.1	Wheat	mitochondrion, nucleus	69.77	61.97
Os08t0520300-01	Rice	nucleus	69.27	61.52
Zm00001d031525_P004	Maize	nucleus	70.03	59.66
Zm00001d049759_P003	Maize	nucleus	66.0	57.21
HORVU7Hr1G052090.3	Barley	nucleus	69.77	56.07
VIT_04s0043g01000.t01	Wine grape	cytosol, extracellular, mitochondrion	17.63	47.95
VIT_03s0063g00850.t01	Wine grape	nucleus	25.69	24.64
VIT_18s0001g11080.t01	Wine grape	nucleus	25.19	23.92
VIT_06s0004g02040.t01	Wine grape	nucleus	26.45	23.6
VIT_19s0090g00280.t01	Wine grape	nucleus	25.94	22.25
VIT_04s0023g01470.t01	Wine grape	nucleus	18.39	19.57
VIT_09s0002g03160.t01	Wine grape	cytosol, nucleus, plastid, vacuole	20.65	17.23
VIT_18s0001g10170.t01	Wine grape	cytosol	24.94	15.47
VIT_07s0031g00210.t01	Wine grape	cytosol	24.43	14.83
VIT_08s0007g04380.t01	Wine grape	cytosol	21.66	13.56
VIT_18s0001g02490.t01	Wine grape	plastid	22.17	13.35
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	23.43	11.82
VIT_18s0001g10190.t01	Wine grape	cytosol, mitochondrion	2.27	7.2
VIT_18s0001g10220.t01	Wine grape	cytosol	0.76	3.0
VIT_18s0001g10210.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

EntrezGene:100245579	wikigene:100245579	MapMan:16.9.3	Gene3D:3.30.70.330	ProteinID:CBI20808	ProteinID:CBI20808.3
UniProt:D7SU59	EMBL:FN595231	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100245579	wikigene:LOC100245579	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR44160	PANTHER:PTHR44160:SF4	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	TIGR:TC60672	UniParc:UPI0001BE1C8F	ArrayExpress:VIT_04s0008g02930	EnsemblPlantsGene:VIT_04s0008g02930	EnsemblPlants:VIT_04s0008g02930.t01
unigene:Vvi.504	RefSeq:XP_002283326	RefSeq:XP_002283326.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:-:2408021..2422846

Molecular Weight (calculated)

42852.1 Da

IEP (calculated)

6.942

GRAVY (calculated)

-0.392

Length

397 amino acids

Sequence
(BLAST)

001: MEPVPSGNLP PGFDSSSCRS VYVGNIHVNV TEKLLAEVFQ SAGPLAGCKL IRKDKSSYGF VDYLDRASAS LAIMTLHGRQ VYGQALKVNW AYASGQREDT
101: SGHFNIFVGD LSPEVTDATL YACFSVFASC SDARVMWDHK TGRSKGYGFV SFRNQQDAQS AINDLSGKWL GNRQIRCNWA TKGAGFNEDK QVNENQNAVV
201: LTNGSSDGSQ ENTNEEAPEN NPAYTTVYVG NLSHEVTQAE LHCQFHALGA GVIEEVRIQR DKGFGFVRYH THEEAALAIQ MANGRIVRGK SMKCSWGSKP
301: TPLGTASNPL PPPAQPYQIL PTAGINQGYS PAELLAYQRQ LALSQAAASS LSGQALMQMT GHHGLAAGSM GVSSGGTQAM YDGYPNNSSG QQLMYYH

Best Arabidopsis Sequence Match ( AT3G14100.1 )
(BLAST)

001: MQNPRLKQHQ QQQQQQAMMQ QQALMQQHSL YHPGVLAPPQ LEPVPSGNLP PGFDPSTCRS VYVGNIHTQV TEPLLQEIFT STGPVESSKL IRKDKSSYGF
101: VHYFDRRSAA LAILSLNGRH LFGQPIKVNW AYATGQREDT SSHFNIFVGD LSPEVTDATL YQSFSVFSSC SDARVMWDQK TGRSRGFGFV SFRNQQDAQT
201: AINEMNGKWL SSRQIRCNWA TKGATSGDDK LSSDGKSVVE LTTGSSEDGK ETLNEETPEN NSQFTTVYVG NLAPEVTQLD LHRYFHALGA GVIEEVRVQR
301: DKGFGFVRYN THPEAALAIQ MGNTQPYLFN RQIKCSWGNK PTPPGTASNP LPPPAPAPVP GLSAADLLNY ERQLALSKMA SVNALMHQQG QHPLRQAHGI
401: NAAGATAAMY DGGFQNVAAA QQLMYYQ

Arabidopsis Description

UBP1COligouridylate-binding protein 1C [Source:UniProtKB/Swiss-Prot;Acc:Q9LJH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.