Factsheet for VIT_09s0002g00880.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06218	Soybean	nucleus	89.76	90.62
KRH47641	Soybean	nucleus	90.95	90.52
AT1G17370.1	Thale cress	mitochondrion, nucleus	84.05	84.25
VIT_11s0016g00700.t01	Wine grape	mitochondrion, nucleus	84.29	83.89
Bra030985.1-P	Field mustard	mitochondrion, nucleus	81.67	82.06
CDY63384	Canola	mitochondrion, nucleus	81.67	82.06
GSMUA_Achr6P11660_001	Banana	mitochondrion	81.9	81.32
GSMUA_Achr10P...	Banana	mitochondrion	80.95	80.0
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	81.43	78.8
VIT_04s0043g01000.t01	Wine grape	cytosol, extracellular, mitochondrion	26.19	75.34
GSMUA_Achr11P...	Banana	nucleus	78.57	74.32
Zm00001d026528_P001	Maize	plastid	37.14	70.91
Os11t0620100-01	Rice	nucleus	74.29	70.75
Os07t0615400-01	Rice	nucleus	71.9	70.73
Zm00001d048824_P004	Maize	nucleus	75.0	70.47
TraesCS4B01G148600.1	Wheat	nucleus	74.29	70.11
TraesCS4D01G150600.2	Wheat	nucleus	73.57	68.82
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	80.95	68.55
VIT_04s0008g02930.t01	Wine grape	nucleus	64.76	68.51
EES08860	Sorghum	nucleus	71.9	68.48
TraesCS2D01G176700.1	Wheat	nucleus	69.29	68.31
TraesCS4A01G150000.1	Wheat	mitochondrion	72.38	67.86
TraesCS2B01G195400.1	Wheat	nucleus	69.05	67.6
TraesCS2A01G169100.1	Wheat	nucleus	68.81	67.52
HORVU4Hr1G033990.7	Barley	golgi, nucleus	69.52	66.51
CDX81822	Canola	mitochondrion, nucleus	81.19	62.57
HORVU2Hr1G031260.2	Barley	nucleus, plastid	69.52	58.75
Zm00001d026522_P001	Maize	nucleus	33.1	56.97
VIT_03s0063g00850.t01	Wine grape	nucleus	26.67	27.05
VIT_18s0001g11080.t01	Wine grape	nucleus	25.95	26.08
VIT_19s0090g00280.t01	Wine grape	nucleus	28.1	25.49
VIT_06s0004g02040.t01	Wine grape	nucleus	25.24	23.82
VIT_04s0023g01470.t01	Wine grape	nucleus	17.38	19.57
VIT_09s0002g03160.t01	Wine grape	cytosol, nucleus, plastid, vacuole	20.24	17.86
VIT_07s0031g00210.t01	Wine grape	cytosol	24.29	15.6
VIT_18s0001g10170.t01	Wine grape	cytosol	23.33	15.31
VIT_08s0007g04380.t01	Wine grape	cytosol	21.19	14.04
VIT_18s0001g02490.t01	Wine grape	plastid	21.9	13.96
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	24.05	12.83
VIT_18s0001g10190.t01	Wine grape	cytosol, mitochondrion	2.38	8.0
VIT_18s0001g10220.t01	Wine grape	cytosol	1.19	5.0
VIT_18s0001g10210.t01	Wine grape	cytosol	0.24	1.59

Protein Annotations

EntrezGene:100260069	wikigene:100260069	MapMan:16.9.3	Gene3D:3.30.70.330	EMBL:AM439183	ProteinID:CAN65009
ProteinID:CAN65009.1	ProteinID:CCB59269	ProteinID:CCB59269.1	UniProt:F6HXU4	EMBL:FN596494	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
EntrezGene:LOC100260069	wikigene:LOC100260069	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44160
PANTHER:PTHR44160:SF2	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	TIGR:TC61727
TIGR:TC62552	UniParc:UPI00015C836F	ArrayExpress:VIT_09s0002g00880	EnsemblPlantsGene:VIT_09s0002g00880	EnsemblPlants:VIT_09s0002g00880.t01	unigene:Vvi.25538
unigene:Vvi.7677	RefSeq:XP_002270823	RefSeq:XP_002270823.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr9:-:621153..627637

Molecular Weight (calculated)

45657.9 Da

IEP (calculated)

7.860

GRAVY (calculated)

-0.410

Length

420 amino acids

Sequence
(BLAST)

001: MQHQRLKQQQ QALMQQALLQ QQSLYHPGLL APPQIEPIPS GNLPPGFDSS TCRSVYVGNI HTQVSEPLLQ EVFASTGPVE GCKLVRKEKS SYGFIHYFDR
101: RSAALAILSL NGRHLFGQPI KVNWAYASGQ REDTSGHFNI FVGDLSPEVT DATLFACFSV FPSCSDARVM WDQKTGRSRG FGFVSFRNQQ DAQSAINDIT
201: GKWLGSRQIR CNWATKGAGS NDDKQSSDAK SVVELTNGSS EDGKETATNE APDNNPQYTT VYVGNLAPEV TQLDLHRHFH TFGAGVIEEV RVQRDKGFGF
301: VRYNTHAEAA LAIQMGNTQS ILCGKPIKCS WGSKPTPPGT SSNPLPPPAA APLPGLSATD LLAYERQLAM SKMGHALMHP QGQHPLKQAA MGMGAAGASQ
401: AIYDGGFQNV AAAQQLMYYQ

Best Arabidopsis Sequence Match ( AT3G14100.1 )
(BLAST)

001: MQNPRLKQHQ QQQQQQAMMQ QQALMQQHSL YHPGVLAPPQ LEPVPSGNLP PGFDPSTCRS VYVGNIHTQV TEPLLQEIFT STGPVESSKL IRKDKSSYGF
101: VHYFDRRSAA LAILSLNGRH LFGQPIKVNW AYATGQREDT SSHFNIFVGD LSPEVTDATL YQSFSVFSSC SDARVMWDQK TGRSRGFGFV SFRNQQDAQT
201: AINEMNGKWL SSRQIRCNWA TKGATSGDDK LSSDGKSVVE LTTGSSEDGK ETLNEETPEN NSQFTTVYVG NLAPEVTQLD LHRYFHALGA GVIEEVRVQR
301: DKGFGFVRYN THPEAALAIQ MGNTQPYLFN RQIKCSWGNK PTPPGTASNP LPPPAPAPVP GLSAADLLNY ERQLALSKMA SVNALMHQQG QHPLRQAHGI
401: NAAGATAAMY DGGFQNVAAA QQLMYYQ

Arabidopsis Description

UBP1COligouridylate-binding protein 1C [Source:UniProtKB/Swiss-Prot;Acc:Q9LJH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.