Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0747400-01 | |
| Os03t0660700-01 | |
| Os04t0617700-01 | |
| Os06t0226700-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G14100.1 | Os03t0660700-01 | AT1G16500.1 | 21798944 |
| AT3G14100.1 | Os04t0617700-01 | AT1G16500.1 | 21798944 |
| AT3G14100.1 | Os02t0747400-01 | AT3G47620.1 | 21798944 |
| AT3G14100.1 | Os06t0226700-01 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G148600.1 | Wheat | nucleus | 85.94 | 85.17 |
| TraesCS4A01G150000.1 | Wheat | mitochondrion | 85.94 | 84.6 |
| TraesCS4D01G150600.2 | Wheat | nucleus | 85.71 | 84.19 |
| Zm00001d026528_P001 | Maize | plastid | 41.95 | 84.09 |
| Zm00001d048824_P004 | Maize | nucleus | 82.99 | 81.88 |
| EES08860 | Sorghum | nucleus | 79.14 | 79.14 |
| HORVU4Hr1G033990.7 | Barley | golgi, nucleus | 77.78 | 78.13 |
| GSMUA_Achr6P11660_001 | Banana | mitochondrion | 71.88 | 74.94 |
| GSMUA_Achr10P... | Banana | mitochondrion | 71.66 | 74.35 |
| VIT_09s0002g00880.t01 | Wine grape | mitochondrion, nucleus | 70.75 | 74.29 |
| PGSC0003DMT400012431 | Potato | mitochondrion, nucleus | 69.84 | 73.86 |
| AT1G17370.1 | Thale cress | mitochondrion, nucleus | 70.07 | 73.75 |
| KRH06218 | Soybean | nucleus | 69.39 | 73.56 |
| GSMUA_Achr3P02150_001 | Banana | mitochondrion, nucleus | 72.34 | 73.5 |
| KRH47641 | Soybean | nucleus | 70.29 | 73.46 |
| Bra030985.1-P | Field mustard | mitochondrion, nucleus | 69.39 | 73.21 |
| CDY63384 | Canola | mitochondrion, nucleus | 69.39 | 73.21 |
| Solyc06g063000.2.1 | Tomato | nucleus | 69.16 | 73.14 |
| VIT_11s0016g00700.t01 | Wine grape | mitochondrion, nucleus | 69.16 | 72.27 |
| Solyc03g122180.2.1 | Tomato | nucleus | 67.8 | 71.7 |
| PGSC0003DMT400058919 | Potato | nucleus | 67.8 | 71.7 |
| GSMUA_Achr11P... | Banana | nucleus | 70.98 | 70.5 |
| AT3G14100.1 | Thale cress | nucleus | 67.8 | 70.02 |
| Solyc07g042180.2.1 | Tomato | nucleus | 63.04 | 69.85 |
| PGSC0003DMT400066072 | Potato | nucleus | 64.4 | 69.27 |
| KRH19347 | Soybean | mitochondrion, nucleus | 64.17 | 69.02 |
| KRH02581 | Soybean | mitochondrion | 64.4 | 68.77 |
| Bra030908.1-P | Field mustard | nucleus | 65.31 | 68.74 |
| CDY61476 | Canola | nucleus | 65.31 | 68.74 |
| CDY02486 | Canola | nucleus | 65.31 | 68.57 |
| CDY51403 | Canola | nucleus | 65.31 | 68.57 |
| Bra037962.1-P | Field mustard | nucleus | 65.31 | 68.41 |
| CDY33092 | Canola | nucleus | 65.53 | 68.0 |
| Os07t0615400-01 | Rice | nucleus | 65.53 | 67.68 |
| PGSC0003DMT400007513 | Potato | mitochondrion, nucleus | 61.22 | 67.33 |
| Solyc12g009230.1.1 | Tomato | mitochondrion, nucleus | 61.0 | 67.08 |
| AT1G54080.2 | Thale cress | nucleus | 64.17 | 65.81 |
| GSMUA_Achr2P21780_001 | Banana | nucleus, plastid | 71.66 | 63.71 |
| Os08t0520300-01 | Rice | nucleus | 61.45 | 60.63 |
| VIT_04s0043g01000.t01 | Wine grape | cytosol, extracellular, mitochondrion | 19.27 | 58.22 |
| CDX81822 | Canola | mitochondrion, nucleus | 69.39 | 56.15 |
| Os02t0567900-01 | Rice | cytosol, nucleus | 17.91 | 30.5 |
| Os04t0449900-01 | Rice | plastid | 23.58 | 26.87 |
| Os07t0516900-01 | Rice | plastid | 14.97 | 26.29 |
| Os03t0569900-01 | Rice | nucleus | 23.81 | 26.12 |
| Os04t0625800-01 | Rice | nucleus | 23.13 | 24.0 |
| Os08t0190200-00 | Rice | nucleus | 22.22 | 22.17 |
| Os03t0174100-02 | Rice | nucleus | 20.86 | 22.12 |
| Os09t0462700-01 | Rice | mitochondrion, nucleus, plastid | 21.77 | 21.77 |
| Os10t0457000-01 | Rice | nucleus | 16.1 | 20.0 |
| Os04t0504800-01 | Rice | plasma membrane | 21.09 | 14.11 |
| Os03t0278500-01 | Rice | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 19.95 | 13.6 |
| Os09t0115400-01 | Rice | nucleus | 19.95 | 13.29 |
| Os08t0314800-02 | Rice | cytosol, nucleus, plasma membrane | 19.73 | 13.18 |
| Os04t0682400-01 | Rice | nucleus | 24.26 | 10.62 |
| Os06t0589700-01 | Rice | cytosol, extracellular | 7.94 | 8.77 |
Protein Annotations
| MapMan:16.9.3 | Gene3D:3.30.70.330 | EntrezGene:4350940 | ProteinID:ABA94773.1 | EMBL:AK120437 | ProteinID:BAF28655.1 |
| ProteinID:BAT14896.1 | ProteinID:EEE52483.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os11g0620100 | EnsemblPlants:Os11t0620100-01 | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR44160 | PANTHER:PTHR44160:SF2 | UniProt:Q2R134 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| InterPro:RRM_dom_euk | SMART:SM00360 | SMART:SM00361 | SUPFAM:SSF54928 | UniParc:UPI0000681E59 | RefSeq:XP_015617424.1 |
| SEG:seg | : | : | : | : | : |
Description
Oligouridylate binding protein. (Os11t0620100-01);Hypothetical conserved gene. (Os11t0620100-03)
Coordinates
chr11:-:24170773..24175615
Molecular Weight (calculated)
47563.9 Da
IEP (calculated)
7.357
GRAVY (calculated)
-0.392
Length
441 amino acids
Sequence
(BLAST)
(BLAST)
001: MQHQQRMKQA AAAAQQQQMM QQALLMQQQQ AAAVAAAAQQ QQAPLFPPHH PHPGLLAAPQ IEPIVSGNLP PGFDSSTCRS VYVGNIHLQV TDSLLHEVFQ
101: SIGPVEGCKL IRKEKSSFGF VDYYDRRSAA IAIVSLNGRQ LFGQPIKVNW AYASTQREDT SGHFNIFVGD LCPEVTDAAL FAFFAGFTSC SDARVMWDQK
201: TGRSRGFGFV SFRNQQDAQN AINELNGKWL GNRQVRCNWA TKGANAGEEK QNTDSKGMIE LTNGSSEGGK DNANEDGPEN NPQYTTVYVG NLPHDVNSND
301: VHRFFHSLGV GSIEEVRVTR DKGFGFVRYS THEEAALAIQ TGNGQLIGGR QIKCSWGSKP TPPGTASAPL PPPAPAPFNP GMSATDLLAY ERTLALSKMA
401: ANPALMSQHA ALKQAAAMGM GAGASQAIYD GGYQSANAVF Y
101: SIGPVEGCKL IRKEKSSFGF VDYYDRRSAA IAIVSLNGRQ LFGQPIKVNW AYASTQREDT SGHFNIFVGD LCPEVTDAAL FAFFAGFTSC SDARVMWDQK
201: TGRSRGFGFV SFRNQQDAQN AINELNGKWL GNRQVRCNWA TKGANAGEEK QNTDSKGMIE LTNGSSEGGK DNANEDGPEN NPQYTTVYVG NLPHDVNSND
301: VHRFFHSLGV GSIEEVRVTR DKGFGFVRYS THEEAALAIQ TGNGQLIGGR QIKCSWGSKP TPPGTASAPL PPPAPAPFNP GMSATDLLAY ERTLALSKMA
401: ANPALMSQHA ALKQAAAMGM GAGASQAIYD GGYQSANAVF Y
001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ
Arabidopsis Description
UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.