Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
18203134
plasma membrane: 27800704 |
msms PMID:
18203134
doi
Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os08t0542900-01 | |
| Os11t0248200-01 | |
| Os12t0225100-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34110.1 | Os08t0542900-01 | AT2G43970.1 | 21798944 |
| AT4G34110.1 | Os11t0248200-01 | AT2G43970.1 | 21798944 |
| AT4G34110.1 | Os12t0225100-01 | AT2G43970.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G287900.1 | Wheat | cytosol | 84.85 | 87.77 |
| TraesCS7A01G288700.1 | Wheat | nucleus | 86.67 | 86.4 |
| Os09t0115400-01 | Rice | nucleus | 81.52 | 81.27 |
| HORVU7Hr1G063970.1 | Barley | cytosol, nucleus, plastid | 86.06 | 79.33 |
| TraesCS7B01G182800.3 | Wheat | cytosol | 79.85 | 78.07 |
| VIT_18s0001g10170.t01 | Wine grape | cytosol | 70.0 | 72.19 |
| KRH70673 | Soybean | nucleus | 69.85 | 71.14 |
| KRH50336 | Soybean | cytosol | 70.0 | 70.97 |
| GSMUA_Achr4P20270_001 | Banana | cytosol | 69.09 | 70.92 |
| KRH15385 | Soybean | nucleus | 69.55 | 70.4 |
| KRH05656 | Soybean | endoplasmic reticulum, nucleus | 69.55 | 70.18 |
| VIT_07s0031g00210.t01 | Wine grape | cytosol | 69.09 | 69.72 |
| Bra013104.1-P | Field mustard | cytosol | 62.88 | 67.37 |
| CDX89664 | Canola | cytosol | 62.42 | 67.1 |
| KRH52023 | Soybean | cytosol, endoplasmic reticulum | 63.64 | 66.67 |
| KRH61326 | Soybean | cytosol, endoplasmic reticulum | 63.64 | 66.67 |
| AT4G34110.1 | Thale cress | cytosol | 63.33 | 66.45 |
| CDY62723 | Canola | cytosol | 61.82 | 66.13 |
| Bra034603.1-P | Field mustard | cytosol, plastid | 61.97 | 66.07 |
| Bra011488.1-P | Field mustard | cytosol, plastid | 61.36 | 66.07 |
| CDX69025 | Canola | nucleus, plastid | 61.06 | 65.96 |
| CDY51957 | Canola | cytosol, plastid | 61.82 | 65.91 |
| CDY67365 | Canola | plastid | 29.09 | 65.75 |
| CDX75397 | Canola | nucleus, plastid | 61.36 | 65.75 |
| CDY54068 | Canola | cytosol | 64.85 | 65.54 |
| CDY67364 | Canola | nucleus | 29.09 | 65.53 |
| Os04t0504800-01 | Rice | plasma membrane | 65.3 | 65.4 |
| CDY51045 | Canola | cytosol | 64.7 | 65.39 |
| Bra018797.1-P | Field mustard | cytosol | 64.7 | 65.39 |
| CDX71223 | Canola | cytosol | 62.88 | 65.05 |
| AT1G49760.1 | Thale cress | cytosol | 64.7 | 63.64 |
| CDY36634 | Canola | nucleus | 61.97 | 63.02 |
| Bra015220.1-P | Field mustard | cytosol | 55.15 | 62.98 |
| CDX79296 | Canola | plastid | 16.82 | 60.66 |
| VIT_03s0063g00070.t01 | Wine grape | cytosol, plastid | 69.7 | 58.45 |
| PGSC0003DMT400012508 | Potato | nucleus | 10.76 | 57.26 |
| GSMUA_Achr7P05430_001 | Banana | nucleus | 72.12 | 52.65 |
| Bra022413.1-P | Field mustard | cytosol | 31.36 | 46.41 |
| Os06t0589700-01 | Rice | cytosol, extracellular | 26.21 | 43.36 |
| CDX92325 | Canola | nucleus | 20.3 | 41.61 |
| Os03t0278500-01 | Rice | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 36.97 | 37.71 |
| CDX91689 | Canola | nucleus | 15.61 | 33.77 |
| Os10t0457000-01 | Rice | nucleus | 15.76 | 29.3 |
| Os02t0567900-01 | Rice | cytosol, nucleus | 10.0 | 25.48 |
| Os08t0190200-00 | Rice | nucleus | 15.91 | 23.76 |
| Os04t0625800-01 | Rice | nucleus | 15.0 | 23.29 |
| Os03t0569900-01 | Rice | nucleus | 14.09 | 23.13 |
| Os03t0174100-02 | Rice | nucleus | 14.24 | 22.6 |
| Os04t0449900-01 | Rice | plastid | 13.18 | 22.48 |
| Os09t0462700-01 | Rice | mitochondrion, nucleus, plastid | 14.09 | 21.09 |
| Os07t0615400-01 | Rice | nucleus | 13.48 | 20.84 |
| Os07t0516900-01 | Rice | plastid | 7.73 | 20.32 |
| Os11t0620100-01 | Rice | nucleus | 13.18 | 19.73 |
| Solyc06g062680.1.1 | Tomato | cytosol | 15.61 | 19.4 |
| Os08t0520300-01 | Rice | nucleus | 13.03 | 19.24 |
| Os04t0682400-01 | Rice | nucleus | 14.39 | 9.42 |
Protein Annotations
| Gene3D:1.10.1900.10 | MapMan:17.4.2.5 | Gene3D:3.30.70.330 | EntrezGene:4345242 | EMBL:AK065167 | ProteinID:BAC92404.1 |
| ProteinID:BAC92537.1 | ProteinID:BAF23429.1 | ProteinID:BAT04852.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| InterPro:IPR000504 | InterPro:IPR002004 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os08g0314800 | EnsemblPlants:Os08t0314800-02 |
| InterPro:PABP-dom | InterPro:PABP_1234 | InterPro:PABP_HYD | PFAM:PF00076 | PFAM:PF00658 | PFscan:PS50102 |
| PFscan:PS51309 | PANTHER:PTHR24012 | PANTHER:PTHR24012:SF679 | UniProt:Q6Z050 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| InterPro:RRM_dom_euk | SMART:SM00360 | SMART:SM00361 | SMART:SM00517 | SUPFAM:SSF54928 | SUPFAM:SSF63570 |
| TIGRFAMs:TIGR01628 | UniParc:UPI00001D1B47 | RefSeq:XP_015650058.1 | SEG:seg | : | : |
Description
Cen8.t01003, OsPABPC2, PABPC2Similar to Poly(A)-binding protein. (Os08t0314800-01);Similar to Poly(A)-binding protein. (Os08t0314800-02);Hypothetical conserved gene. (Os08t0314800-03);Hypothetical conserved gene. (Os08t0314800-04)
Coordinates
chr8:+:13471775..13479204
Molecular Weight (calculated)
71562.6 Da
IEP (calculated)
7.842
GRAVY (calculated)
-0.353
Length
660 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAQVQAVPA AEGGGAPPQA NGVVAAGSAA AAAATFQATS LYVGDLDVSV QDAQLFDVFS QVGSVVSVRV CRDVNTRLSL GYAYVNFSSP ADAARALEML
101: NFTPINGKPI RIMYSNRDPS SRKSGAANIF IKNLDKSIDN KALYDTFSVF GNILSCKVAT EMSGESKGYG FVQFELEEAA QNAISKLNGM LLNDKKVYVG
201: PFVRKQEREN VSGNPKFNNV YVKNLSESTT EDNLKEIFGK FGPITSVVVM REGDGKSRCF GFVNFENPDD AARAVEDLNG KKFDDKEWYV CRAQKKSERE
301: MELKEKFEKN IKEAADKNQG TNLYLKNLDD SIDDDEKLKE IFADFGTITS CKVMRDLNGV SKGSGFVAFK SAEDASRALV AMNGKMIGSK PLYVALAQRK
401: EERRARLQAQ FSQMRPMVMP PSVAPRMPMY PPGVPGVGQQ LFYGQPPPAF VNPQPGFGFQ QHLIPGMRPS VGPIPNFVMP MVQQGQQPQR PAGRRAGTGG
501: IQQPMPMGHQ QMLPRGSRGG YRYASGRGMP DNAFRGVGGL VPSPYEMGRM PLSDAGAPPQ VPIGALASAL ANSPPDQQRL MLGESLYPLV DQLEHDQAAK
601: VTGMLLEMDQ TEVLHLIESP DALKAKVAEA MEVLRNAQQQ QANTPTDQLA ALTLSDGVVS
101: NFTPINGKPI RIMYSNRDPS SRKSGAANIF IKNLDKSIDN KALYDTFSVF GNILSCKVAT EMSGESKGYG FVQFELEEAA QNAISKLNGM LLNDKKVYVG
201: PFVRKQEREN VSGNPKFNNV YVKNLSESTT EDNLKEIFGK FGPITSVVVM REGDGKSRCF GFVNFENPDD AARAVEDLNG KKFDDKEWYV CRAQKKSERE
301: MELKEKFEKN IKEAADKNQG TNLYLKNLDD SIDDDEKLKE IFADFGTITS CKVMRDLNGV SKGSGFVAFK SAEDASRALV AMNGKMIGSK PLYVALAQRK
401: EERRARLQAQ FSQMRPMVMP PSVAPRMPMY PPGVPGVGQQ LFYGQPPPAF VNPQPGFGFQ QHLIPGMRPS VGPIPNFVMP MVQQGQQPQR PAGRRAGTGG
501: IQQPMPMGHQ QMLPRGSRGG YRYASGRGMP DNAFRGVGGL VPSPYEMGRM PLSDAGAPPQ VPIGALASAL ANSPPDQQRL MLGESLYPLV DQLEHDQAAK
601: VTGMLLEMDQ TEVLHLIESP DALKAKVAEA MEVLRNAQQQ QANTPTDQLA ALTLSDGVVS
001: MAQVQLQGQT PNGSTAAVTS APATSGGATA TQFGNTSLYV GDLDFNVTDS QLFDAFGQMG TVVTVRVCRD LVTRRSLGYG YVNFTNPQDA ARAIQELNYI
101: PLYGKPIRVM YSHRDPSVRR SGAGNIFIKN LDESIDHKAL HDTFSSFGNI VSCKVAVDSS GQSKGYGFVQ YANEESAQKA IEKLNGMLLN DKQVYVGPFL
201: RRQERDSTAN KTKFTNVYVK NLAESTTDDD LKNAFGEYGK ITSAVVMKDG EGKSKGFGFV NFENADDAAR AVESLNGHKF DDKEWYVGRA QKKSERETEL
301: RVRYEQNLKE AADKFQSSNL YVKNLDPSIS DEKLKEIFSP FGTVTSSKVM RDPNGTSKGS GFVAFATPEE ATEAMSQLSG KMIESKPLYV AIAQRKEDRR
401: VRLQAQFSQV RPVAMQPSVG PRMPVYPPGG PGIGQQMFYG QAPPAMIPPQ PGYGYQQQLV PGMRPGGGPV PSFFMPMVQP QQQRPGGGRR PGGIQHSQQQ
501: NPMMQQQMHP RGRMFRYPQG RGGSGDVPPY DMGNNMPLTI GALASNLSNA TPEQQRTMLG EVLYPLVEQV EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAT EQLASLNLS
101: PLYGKPIRVM YSHRDPSVRR SGAGNIFIKN LDESIDHKAL HDTFSSFGNI VSCKVAVDSS GQSKGYGFVQ YANEESAQKA IEKLNGMLLN DKQVYVGPFL
201: RRQERDSTAN KTKFTNVYVK NLAESTTDDD LKNAFGEYGK ITSAVVMKDG EGKSKGFGFV NFENADDAAR AVESLNGHKF DDKEWYVGRA QKKSERETEL
301: RVRYEQNLKE AADKFQSSNL YVKNLDPSIS DEKLKEIFSP FGTVTSSKVM RDPNGTSKGS GFVAFATPEE ATEAMSQLSG KMIESKPLYV AIAQRKEDRR
401: VRLQAQFSQV RPVAMQPSVG PRMPVYPPGG PGIGQQMFYG QAPPAMIPPQ PGYGYQQQLV PGMRPGGGPV PSFFMPMVQP QQQRPGGGRR PGGIQHSQQQ
501: NPMMQQQMHP RGRMFRYPQG RGGSGDVPPY DMGNNMPLTI GALASNLSNA TPEQQRTMLG EVLYPLVEQV EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAT EQLASLNLS
Arabidopsis Description
PAB2Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A178UWB3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.