Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G252200.1 | Wheat | mitochondrion, nucleus | 93.96 | 93.96 |
| EES15356 | Sorghum | nucleus | 93.51 | 93.51 |
| TraesCS7B01G138700.1 | Wheat | mitochondrion, nucleus | 93.51 | 93.51 |
| TraesCS7D01G250300.1 | Wheat | mitochondrion, nucleus | 93.29 | 93.29 |
| Zm00001d031525_P004 | Maize | nucleus | 90.83 | 87.12 |
| Zm00001d049759_P003 | Maize | nucleus | 88.14 | 86.03 |
| HORVU7Hr1G052090.3 | Barley | nucleus | 93.29 | 84.41 |
| GSMUA_Achr9P14120_001 | Banana | nucleus | 66.89 | 73.65 |
| VIT_04s0008g02930.t01 | Wine grape | nucleus | 61.52 | 69.27 |
| KRH61952 | Soybean | mitochondrion | 65.32 | 68.71 |
| KRH52613 | Soybean | nucleus | 65.77 | 67.59 |
| Os07t0615400-01 | Rice | nucleus | 59.28 | 62.06 |
| Os11t0620100-01 | Rice | nucleus | 60.63 | 61.45 |
| Os02t0567900-01 | Rice | cytosol, nucleus | 18.57 | 32.05 |
| Os03t0569900-01 | Rice | nucleus | 24.83 | 27.61 |
| Os07t0516900-01 | Rice | plastid | 15.44 | 27.49 |
| Os04t0449900-01 | Rice | plastid | 23.49 | 27.13 |
| Os04t0625800-01 | Rice | nucleus | 25.06 | 26.35 |
| Os08t0190200-00 | Rice | nucleus | 24.38 | 24.66 |
| Os03t0174100-02 | Rice | nucleus | 21.7 | 23.32 |
| Os09t0462700-01 | Rice | mitochondrion, nucleus, plastid | 22.6 | 22.9 |
| Os10t0457000-01 | Rice | nucleus | 15.21 | 19.15 |
| Os04t0504800-01 | Rice | plasma membrane | 21.92 | 14.87 |
| Os09t0115400-01 | Rice | nucleus | 20.36 | 13.75 |
| Os03t0278500-01 | Rice | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 19.02 | 13.14 |
| Os08t0314800-02 | Rice | cytosol, nucleus, plasma membrane | 19.24 | 13.03 |
| Os04t0682400-01 | Rice | nucleus | 23.49 | 10.42 |
| Os06t0589700-01 | Rice | cytosol, extracellular | 8.28 | 9.27 |
Protein Annotations
| MapMan:16.9.3 | Gene3D:3.30.70.330 | EntrezGene:4346063 | EMBL:AK069912 | ProteinID:BAD09702.1 | ProteinID:BAD10437.1 |
| ProteinID:BAF24180.1 | ProteinID:BAT06291.1 | ncoils:Coil | ProteinID:EEE69011.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os08g0520300 |
| EnsemblPlants:Os08t0520300-01 | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44160 | PANTHER:PTHR44160:SF2 | UniProt:Q6YZW2 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000023AEE7 | RefSeq:XP_015649757.1 |
| SEG:seg | : | : | : | : | : |
Description
Similar to Oligouridylate binding protein. (Os08t0520300-01)
Coordinates
chr8:-:25859053..25864844
Molecular Weight (calculated)
48768.0 Da
IEP (calculated)
7.324
GRAVY (calculated)
-0.533
Length
447 amino acids
Sequence
(BLAST)
(BLAST)
001: MNGAGGNHQQ QQQQQQRLRQ QQQQQALLMQ QALQQQQQYQ SGVLAAAAAA AMTQMEPISN GNLPPGFDPS TCRSVYVGNV HPNVTESLLI EVFQSSGLVE
101: RCKLIRKEKS SFGFVDYYDR RSAALAIMTL HGRHICGQAI KVNWAYASTQ REDTSGHFHI FVGDLSSEVN DATLYACFSA YPSCSDARVM WDNKTGRSRG
201: YGFVSFRNQQ EAETAITEMT GKWLGSRQIR CNWATKNNAE EKQETDNHNA VVLTNGSSSN PGMEASQDTG SKENPENNPD CTTVYVGNLG HEVNRDELHR
301: HFYNLGVGAI EEVRVQQDKG FGFVRYSNHG EAALAIQMAN GLVVRGKPIK CSWGNKPTPP GTSSKPLPPP LPSYQPVPMA GVPQGFSAAD IVAYQRQLTL
401: SQVAAGQIAG QHGLAGQVSA GLLAAGSQAL YDGYPNQSSA QQLMYYN
101: RCKLIRKEKS SFGFVDYYDR RSAALAIMTL HGRHICGQAI KVNWAYASTQ REDTSGHFHI FVGDLSSEVN DATLYACFSA YPSCSDARVM WDNKTGRSRG
201: YGFVSFRNQQ EAETAITEMT GKWLGSRQIR CNWATKNNAE EKQETDNHNA VVLTNGSSSN PGMEASQDTG SKENPENNPD CTTVYVGNLG HEVNRDELHR
301: HFYNLGVGAI EEVRVQQDKG FGFVRYSNHG EAALAIQMAN GLVVRGKPIK CSWGNKPTPP GTSSKPLPPP LPSYQPVPMA GVPQGFSAAD IVAYQRQLTL
401: SQVAAGQIAG QHGLAGQVSA GLLAAGSQAL YDGYPNQSSA QQLMYYN
001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ
Arabidopsis Description
UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.