Factsheet for Os10t0457000-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 19621931
plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94133	Sorghum	nucleus	89.86	89.86
Zm00001d032807_P001	Maize	nucleus	90.42	89.42
Zm00001d014094_P002	Maize	extracellular, plasma membrane	89.86	89.36
HORVU1Hr1G038240.1	Barley	nucleus	89.86	86.68
TraesCS1D01G142300.1	Wheat	nucleus	89.58	86.41
TraesCS1B01G160900.1	Wheat	nucleus	89.3	86.14
TraesCS1A01G143500.1	Wheat	nucleus	89.01	85.87
KRH36396	Soybean	endoplasmic reticulum	78.59	76.44
KRH27525	Soybean	nucleus	78.31	76.37
GSMUA_Achr5P20140_001	Banana	nucleus	78.31	75.96
VIT_04s0023g01470.t01	Wine grape	nucleus	79.72	75.87
Solyc03g118800.2.1	Tomato	nucleus	74.65	72.8
PGSC0003DMT400023075	Potato	nucleus	74.08	72.45
PGSC0003DMT400014744	Potato	nucleus	74.08	72.25
AT2G18510.1	Thale cress	nucleus	70.99	69.42
CDY66740	Canola	nucleus	73.52	68.5
CDY43894	Canola	nucleus	70.14	68.41
Bra039603.1-P	Field mustard	nucleus	70.14	68.41
Bra037217.1-P	Field mustard	nucleus	73.24	68.24
CDY67617	Canola	nucleus	73.24	68.24
CDY59539	Canola	nucleus	70.14	68.03
Os07t0516900-01	Rice	plastid	14.37	20.32
Os04t0504800-01	Rice	plasma membrane	30.99	16.69
Os04t0449900-01	Rice	plastid	18.03	16.54
Os07t0615400-01	Rice	nucleus	19.44	16.16
Os11t0620100-01	Rice	nucleus	20.0	16.1
Os03t0569900-01	Rice	nucleus	18.03	15.92
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	29.3	15.76
Os09t0115400-01	Rice	nucleus	29.01	15.56
Os08t0520300-01	Rice	nucleus	19.15	15.21
Os03t0174100-02	Rice	nucleus	17.75	15.14
Os02t0567900-01	Rice	cytosol, nucleus	10.7	14.67
Os03t0278500-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	26.2	14.37
Os04t0625800-01	Rice	nucleus	17.18	14.35
Os09t0462700-01	Rice	mitochondrion, nucleus, plastid	17.46	14.06
Os08t0190200-00	Rice	nucleus	15.77	12.67
Os04t0682400-01	Rice	nucleus	18.31	6.45
Os06t0589700-01	Rice	cytosol, extracellular	6.76	6.02

Protein Annotations

MapMan:16.4.1.2.4.4	Gene3D:3.30.70.330	EntrezGene:4348798	ProteinID:AAP54095.1	EMBL:AK103490	ProteinID:BAF26673.1
ProteinID:BAT11138.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os10g0457000	EnsemblPlants:Os10t0457000-01	PFAM:PF00076	PRINTS:PR01217
PFscan:PS50102	PANTHER:PTHR44799	UniProt:Q7XDP6	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:SF3B4_RRM1
InterPro:SF3B4_RRM2	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00001A3CEB	RefSeq:XP_015614791.1	SEG:seg

Description

Nucleotide-binding, alpha-beta plait domain containing protein. (Os10t0457000-01);Hypothetical conserved gene. (Os10t0457000-02)

Coordinates

chr10:+:16750745..16755109

Molecular Weight (calculated)

38851.6 Da

IEP (calculated)

8.859

GRAVY (calculated)

-0.632

Length

355 amino acids

Sequence
(BLAST)

001: MTTRIAPGVG ANLLGQHSAE RNQDATTYVG NLDPQVSEEL LWELFVQAGP VVNVYVPKDR VTNLHQGYGF VEFRSEEDAD YAIKILNMIK LYGKPIRVNK
101: ASQDKKSLDV GANLFIGNLD PDVDEKLLYD TFSAFGVIVT NPKIMRDPET GNSRGFGFVS YDSFESSDQA IEAMNNQHLC NRPITVSYAY KKDTKGERHG
201: TPAERLLAAN NPGSQKNRPH TMFASGPPTQ GLANGAPVPR PFSNGAVPPQ IQHVRPPPPP MQQFPPMQMN GQPVWPPQNT QLPPHMPPQM HYRPAVRPPP
301: PNMMPPPPLG MVRPPPPPSS MPAPPMWRPP PPPQQAGGMP PPPMSMPPPP PPPSG

Best Arabidopsis Sequence Match ( AT2G18510.1 )
(BLAST)

001: MTTRIAPGVG ANLLGQHSAE RNQDATVYVG GLDAQLSEEL LWELFVQAGP VVNVYVPKDR VTNLHQNYGF IEYRSEEDAD YAIKVLNMIK LHGKPIRVNK
101: ASQDKKSLDV GANLFIGNLD PDVDEKLLYD TFSAFGVIAS NPKIMRDPDT GNSRGFGFIS YDSFEASDAA IESMTGQYLS NRQITVSYAY KKDTKGERHG
201: TPAERLLAAT NPTAQKSRPH TLFAMGPPSS APQVNGLPRP FANGSMQPVP IPAPRQPPPP PPQVYQTQPP SWPSQPQQHS MVPPPMQFRP PQGMPPPPPP
301: QFLNHQQGFG GPRPPPPPQA MGMHQHGGWP PQHMQQQGGP PQQQQPPYQH HHMSMPPPPP HQG

Arabidopsis Description

emb2444Emb2444 [Source:UniProtKB/TrEMBL;Acc:A0A178VZK5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.