Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d014094_P002 | Maize | extracellular, plasma membrane | 96.1 | 96.64 |
| EER94133 | Sorghum | nucleus | 94.99 | 96.06 |
| Os10t0457000-01 | Rice | nucleus | 89.42 | 90.42 |
| TraesCS1D01G142300.1 | Wheat | nucleus | 88.58 | 86.41 |
| HORVU1Hr1G038240.1 | Barley | nucleus | 88.58 | 86.41 |
| TraesCS1B01G160900.1 | Wheat | nucleus | 88.3 | 86.14 |
| TraesCS1A01G143500.1 | Wheat | nucleus | 88.02 | 85.87 |
| GSMUA_Achr5P20140_001 | Banana | nucleus | 76.04 | 74.59 |
| VIT_04s0023g01470.t01 | Wine grape | nucleus | 76.32 | 73.46 |
| KRH27525 | Soybean | nucleus | 74.37 | 73.35 |
| KRH36396 | Soybean | endoplasmic reticulum | 74.37 | 73.15 |
| Solyc03g118800.2.1 | Tomato | nucleus | 72.98 | 71.98 |
| PGSC0003DMT400023075 | Potato | nucleus | 72.42 | 71.63 |
| PGSC0003DMT400014744 | Potato | nucleus | 72.42 | 71.43 |
| AT2G18510.1 | Thale cress | nucleus | 68.25 | 67.49 |
| CDY66740 | Canola | nucleus | 70.47 | 66.4 |
| CDY43894 | Canola | nucleus | 67.13 | 66.21 |
| Bra039603.1-P | Field mustard | nucleus | 67.13 | 66.21 |
| Bra037217.1-P | Field mustard | nucleus | 70.19 | 66.14 |
| CDY67617 | Canola | nucleus | 70.19 | 66.14 |
| CDY59539 | Canola | nucleus | 67.13 | 65.85 |
| Zm00001d009512_P001 | Maize | mitochondrion | 8.91 | 24.24 |
| Zm00001d026528_P001 | Maize | plastid | 14.48 | 23.64 |
| Zm00001d018546_P001 | Maize | endoplasmic reticulum, extracellular | 8.91 | 22.54 |
| Zm00001d021149_P001 | Maize | cytosol | 10.03 | 21.82 |
| Zm00001d010739_P001 | Maize | mitochondrion | 7.52 | 21.77 |
| Zm00001d003106_P003 | Maize | extracellular, mitochondrion, plasma membrane | 30.36 | 16.72 |
| Zm00001d025801_P005 | Maize | cytosol, plastid | 28.97 | 15.95 |
| Zm00001d013812_P001 | Maize | nucleus | 17.83 | 15.76 |
| Zm00001d048824_P004 | Maize | nucleus | 19.22 | 15.44 |
| Zm00001d005276_P007 | Maize | cytosol | 27.86 | 15.29 |
| Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 17.83 | 15.09 |
| Zm00001d025551_P002 | Maize | plastid | 18.66 | 14.82 |
| Zm00001d019824_P004 | Maize | cytosol | 27.02 | 14.79 |
| Zm00001d031525_P004 | Maize | nucleus | 18.94 | 14.59 |
| Zm00001d020748_P002 | Maize | plasma membrane | 17.27 | 14.32 |
| Zm00001d007929_P002 | Maize | nucleus | 14.21 | 14.21 |
| Zm00001d050838_P001 | Maize | plastid | 16.99 | 14.19 |
| Zm00001d046487_P001 | Maize | cytosol | 25.07 | 14.0 |
| Zm00001d049759_P003 | Maize | nucleus | 16.71 | 13.1 |
| Zm00001d026346_P002 | Maize | extracellular | 15.6 | 13.08 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 17.27 | 13.08 |
| Zm00001d016252_P001 | Maize | nucleus | 13.65 | 13.03 |
| Zm00001d002244_P003 | Maize | nucleus | 16.16 | 12.95 |
| Zm00001d021633_P006 | Maize | nucleus | 16.16 | 12.47 |
| Zm00001d049416_P001 | Maize | extracellular, nucleus | 15.6 | 12.28 |
| Zm00001d047790_P001 | Maize | plastid | 24.79 | 12.11 |
| Zm00001d017181_P001 | Maize | mitochondrion, nucleus, plastid | 8.08 | 10.82 |
| Zm00001d006496_P004 | Maize | nucleus | 16.16 | 10.68 |
| Zm00001d027869_P002 | Maize | nucleus | 18.38 | 8.65 |
| Zm00001d026522_P001 | Maize | nucleus | 4.18 | 6.15 |
Protein Annotations
| EntrezGene:100501457 | MapMan:16.4.1.2.4.4 | Gene3D:3.30.70.330 | EMBL:BT085328 | UniProt:C4J3D1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| ProteinID:ONM06096.1 | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44799 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| InterPro:SF3B4_RRM1 | InterPro:SF3B4_RRM2 | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0001A4BDCC | EnsemblPlantsGene:Zm00001d032807 |
| EnsemblPlants:Zm00001d032807_P001 | EnsemblPlants:Zm00001d032807_T001 | SEG:seg | : | : | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Coordinates
chr1:-:238896507..238900694
Molecular Weight (calculated)
39183.0 Da
IEP (calculated)
8.424
GRAVY (calculated)
-0.616
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MTIRIAPGVG ANLLGQHSAE RNQDATTYVG NLDPQVSEEL LWELFVQAGP VVNVYVPKDR VTNLHQGYGF VEFRSEEDAD YAIKILNMIK LYGKPIRVNK
101: ASQDKKSLDV GANLFIGNLD PDVDEKLLYD TFSAFGVIVT NPKIMRDPET GNSRGFGFVS YESFESSDQA IEAMNNQHLC NRPITVSYAY KKDTKGERHG
201: TPAERLLASN NPGSQKNRPH TMFASGPPTQ GLPNGGPPVP RPFGNGTIPG QIQHIRQPPP PPPVGQFPPP MQMHGQPAWP AQHSMPPHMS SQLQYRLPMR
301: PPPPNMMPPP VGMVRPPPPP TGMSAPHMWM PPPPPPSSQQ GGMPPPPMSM PPPPPPPSG
101: ASQDKKSLDV GANLFIGNLD PDVDEKLLYD TFSAFGVIVT NPKIMRDPET GNSRGFGFVS YESFESSDQA IEAMNNQHLC NRPITVSYAY KKDTKGERHG
201: TPAERLLASN NPGSQKNRPH TMFASGPPTQ GLPNGGPPVP RPFGNGTIPG QIQHIRQPPP PPPVGQFPPP MQMHGQPAWP AQHSMPPHMS SQLQYRLPMR
301: PPPPNMMPPP VGMVRPPPPP TGMSAPHMWM PPPPPPSSQQ GGMPPPPMSM PPPPPPPSG
001: MTTRIAPGVG ANLLGQHSAE RNQDATVYVG GLDAQLSEEL LWELFVQAGP VVNVYVPKDR VTNLHQNYGF IEYRSEEDAD YAIKVLNMIK LHGKPIRVNK
101: ASQDKKSLDV GANLFIGNLD PDVDEKLLYD TFSAFGVIAS NPKIMRDPDT GNSRGFGFIS YDSFEASDAA IESMTGQYLS NRQITVSYAY KKDTKGERHG
201: TPAERLLAAT NPTAQKSRPH TLFAMGPPSS APQVNGLPRP FANGSMQPVP IPAPRQPPPP PPQVYQTQPP SWPSQPQQHS MVPPPMQFRP PQGMPPPPPP
301: QFLNHQQGFG GPRPPPPPQA MGMHQHGGWP PQHMQQQGGP PQQQQPPYQH HHMSMPPPPP HQG
101: ASQDKKSLDV GANLFIGNLD PDVDEKLLYD TFSAFGVIAS NPKIMRDPDT GNSRGFGFIS YDSFEASDAA IESMTGQYLS NRQITVSYAY KKDTKGERHG
201: TPAERLLAAT NPTAQKSRPH TLFAMGPPSS APQVNGLPRP FANGSMQPVP IPAPRQPPPP PPQVYQTQPP SWPSQPQQHS MVPPPMQFRP PQGMPPPPPP
301: QFLNHQQGFG GPRPPPPPQA MGMHQHGGWP PQHMQQQGGP PQQQQPPYQH HHMSMPPPPP HQG
Arabidopsis Description
emb2444Emb2444 [Source:UniProtKB/TrEMBL;Acc:A0A178VZK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.