Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 4
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
mitochondrion: 27297264 plasma membrane: 27341663 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d007279_P001 | |
| Zm00001d020113_P001 | |
| Zm00001d023987_P001 | |
| Zm00001d031707_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES12460 | Sorghum | plastid | 97.09 | 95.33 |
| Zm00001d025801_P005 | Maize | cytosol, plastid | 94.63 | 94.63 |
| HORVU2Hr1G087390.3 | Barley | cytosol, mitochondrion, nucleus | 80.06 | 85.43 |
| Os04t0504800-01 | Rice | plasma membrane | 85.74 | 84.83 |
| TraesCS2D01G358000.1 | Wheat | cytosol | 84.51 | 82.98 |
| TraesCS2B01G378400.1 | Wheat | nucleus | 84.51 | 82.86 |
| TraesCS2A01G359000.1 | Wheat | cytosol | 84.51 | 82.86 |
| GSMUA_AchrUn_... | Banana | cytosol | 72.24 | 72.24 |
| VIT_18s0001g10170.t01 | Wine grape | cytosol | 70.71 | 72.03 |
| GSMUA_Achr4P09890_001 | Banana | cytosol | 71.93 | 71.93 |
| GSMUA_Achr9P00990_001 | Banana | cytosol | 70.4 | 70.51 |
| KRH70673 | Soybean | nucleus | 69.48 | 69.91 |
| KRH15385 | Soybean | nucleus | 69.63 | 69.63 |
| KRH50336 | Soybean | cytosol | 69.48 | 69.59 |
| KRH05656 | Soybean | endoplasmic reticulum, nucleus | 68.71 | 68.5 |
| VIT_07s0031g00210.t01 | Wine grape | cytosol | 68.71 | 68.5 |
| CDY51957 | Canola | cytosol, plastid | 63.04 | 66.4 |
| CDY62723 | Canola | cytosol | 62.73 | 66.29 |
| Bra034603.1-P | Field mustard | cytosol, plastid | 62.88 | 66.24 |
| Bra011488.1-P | Field mustard | cytosol, plastid | 61.96 | 65.91 |
| CDX89664 | Canola | cytosol | 61.81 | 65.64 |
| CDX69025 | Canola | nucleus, plastid | 61.5 | 65.63 |
| CDY51045 | Canola | cytosol | 65.49 | 65.39 |
| Bra018797.1-P | Field mustard | cytosol | 65.49 | 65.39 |
| AT4G34110.1 | Thale cress | cytosol | 63.04 | 65.34 |
| KRH61326 | Soybean | cytosol, endoplasmic reticulum | 63.04 | 65.24 |
| CDX71223 | Canola | cytosol | 63.8 | 65.2 |
| CDX75397 | Canola | nucleus, plastid | 61.5 | 65.1 |
| CDY54068 | Canola | cytosol | 65.18 | 65.08 |
| KRH52023 | Soybean | cytosol, endoplasmic reticulum | 62.88 | 65.08 |
| Zm00001d005276_P007 | Maize | cytosol | 65.18 | 64.98 |
| Bra013104.1-P | Field mustard | cytosol | 60.89 | 64.45 |
| Zm00001d019824_P004 | Maize | cytosol | 64.42 | 64.02 |
| CDY67364 | Canola | nucleus | 28.68 | 63.82 |
| AT1G49760.1 | Thale cress | cytosol | 65.34 | 63.49 |
| CDY36634 | Canola | nucleus | 61.96 | 62.25 |
| CDX79296 | Canola | plastid | 17.33 | 61.75 |
| Bra015220.1-P | Field mustard | cytosol | 54.6 | 61.59 |
| CDY67365 | Canola | plastid | 27.3 | 60.96 |
| VIT_03s0063g00070.t01 | Wine grape | cytosol, plastid | 69.63 | 57.69 |
| GSMUA_Achr8P24250_001 | Banana | cytosol, plastid | 55.83 | 56.17 |
| PGSC0003DMT400012508 | Potato | nucleus | 9.82 | 51.61 |
| Bra022413.1-P | Field mustard | cytosol | 30.37 | 44.39 |
| Zm00001d046487_P001 | Maize | cytosol | 42.48 | 43.08 |
| CDX92325 | Canola | nucleus | 20.55 | 41.61 |
| CDX91689 | Canola | nucleus | 16.1 | 34.43 |
| Zm00001d047790_P001 | Maize | plastid | 37.73 | 33.47 |
| Zm00001d014094_P002 | Maize | extracellular, plasma membrane | 17.02 | 31.09 |
| Zm00001d032807_P001 | Maize | nucleus | 16.72 | 30.36 |
| Zm00001d013812_P001 | Maize | nucleus | 14.72 | 23.65 |
| Zm00001d026346_P002 | Maize | extracellular | 15.49 | 23.6 |
| Zm00001d021149_P001 | Maize | cytosol | 5.83 | 23.03 |
| Zm00001d007929_P002 | Maize | nucleus | 12.27 | 22.28 |
| Zm00001d002244_P003 | Maize | nucleus | 15.18 | 22.1 |
| Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 14.26 | 21.93 |
| Zm00001d020748_P002 | Maize | plasma membrane | 14.42 | 21.71 |
| Zm00001d009512_P001 | Maize | mitochondrion | 4.29 | 21.21 |
| Zm00001d026528_P001 | Maize | plastid | 7.06 | 20.91 |
| Zm00001d049416_P001 | Maize | extracellular, nucleus | 14.42 | 20.61 |
| Zm00001d048824_P004 | Maize | nucleus | 13.96 | 20.36 |
| Zm00001d031525_P004 | Maize | nucleus | 14.42 | 20.17 |
| Zm00001d010739_P001 | Maize | mitochondrion | 3.83 | 20.16 |
| Zm00001d025551_P002 | Maize | plastid | 13.8 | 19.91 |
| Zm00001d050838_P001 | Maize | plastid | 12.88 | 19.53 |
| Zm00001d049759_P003 | Maize | nucleus | 13.5 | 19.21 |
| Zm00001d021633_P006 | Maize | nucleus | 13.65 | 19.14 |
| Zm00001d018546_P001 | Maize | endoplasmic reticulum, extracellular | 4.14 | 19.01 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 13.19 | 18.14 |
| Solyc06g062680.1.1 | Tomato | cytosol | 14.72 | 18.08 |
| Zm00001d026522_P001 | Maize | nucleus | 6.44 | 17.21 |
| Zm00001d006496_P004 | Maize | nucleus | 13.65 | 16.39 |
| Zm00001d016252_P001 | Maize | nucleus | 7.21 | 12.5 |
| Zm00001d027869_P002 | Maize | nucleus | 13.34 | 11.4 |
| Zm00001d017181_P001 | Maize | mitochondrion, nucleus, plastid | 3.83 | 9.33 |
Protein Annotations
| Gene3D:1.10.1900.10 | MapMan:17.4.2.5 | Gene3D:3.30.70.330 | UniProt:A0A1D6E6L1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| InterPro:IPR000504 | InterPro:IPR002004 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:ONM16085.1 | InterPro:PABP-dom |
| InterPro:PABP_1234 | InterPro:PABP_HYD | PFAM:PF00076 | PFAM:PF00658 | PFscan:PS50102 | PFscan:PS51309 |
| PANTHER:PTHR24012 | PANTHER:PTHR24012:SF678 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00360 |
| SMART:SM00361 | SMART:SM00517 | SUPFAM:SSF54928 | SUPFAM:SSF63570 | TIGRFAMs:TIGR01628 | UniParc:UPI000844C7DF |
| EnsemblPlantsGene:Zm00001d003106 | EnsemblPlants:Zm00001d003106_P003 | EnsemblPlants:Zm00001d003106_T003 | SEG:seg | : | : |
Description
Polyadenylate-binding protein 2
Coordinates
chr2:+:32427122..32432353
Molecular Weight (calculated)
71483.9 Da
IEP (calculated)
9.199
GRAVY (calculated)
-0.363
Length
652 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAQVAAVVV PNVVSPGAVG VGLGVAQPLP TTSLYVGDLE GSVSDSQLYE LFSQAGQVVS VRVCRDVTSR RSLGYAYVNF NNPLDAARAL EVLNFAPLNN
101: KPIRVMYSNR DPSSRRSGSA NIFIKNLDKM IDNKSLHETF SSFGTILSCK VAMDEGGQSK GFGFVQYEKE EAAQNAIKSL NGMLINDKPV FVGPFLRKQE
201: RDHSFDKTKF NNVFVKNLSE STTKEDLLKI FGEYGNITSA VVMIGMDGKS RCFGFINFEN PDAASRAVQE LNGKKINDKE WYVGRAQKKS EREMELKRRF
301: EQILKDAADK YQGLNLYLKN LDDSIGDDQL RELFSNFGKI TSCKVMRDQN GLSKGSGFVA FSTREEASQA LTEMNGKMIS GKPLYVAFAQ RKEDRKAMLQ
401: AQFSQMRPAV PMTPTLAPRL PMYPPMAPQQ LFYGQAPPAM IPPQPGFGFQ QQLVPGMRPG GPHMPNYFVP VVQHQQGQQG PRPGIRRGAG AQGQQPVPPF
501: QQQIVPRGRM YRYPTGRNMP EAPAMPGVAG GMMQAYDMGG FPVRDAALSP AAQIGTLTSA LANANPEQQR TILGENLYPL VEQLEPNQAA KVTGMLLEMD
601: QTEVLHLLES PDALKSKVAE AMDVLHNVAH QQNANTPTSQ LAALSLTEGI IS
101: KPIRVMYSNR DPSSRRSGSA NIFIKNLDKM IDNKSLHETF SSFGTILSCK VAMDEGGQSK GFGFVQYEKE EAAQNAIKSL NGMLINDKPV FVGPFLRKQE
201: RDHSFDKTKF NNVFVKNLSE STTKEDLLKI FGEYGNITSA VVMIGMDGKS RCFGFINFEN PDAASRAVQE LNGKKINDKE WYVGRAQKKS EREMELKRRF
301: EQILKDAADK YQGLNLYLKN LDDSIGDDQL RELFSNFGKI TSCKVMRDQN GLSKGSGFVA FSTREEASQA LTEMNGKMIS GKPLYVAFAQ RKEDRKAMLQ
401: AQFSQMRPAV PMTPTLAPRL PMYPPMAPQQ LFYGQAPPAM IPPQPGFGFQ QQLVPGMRPG GPHMPNYFVP VVQHQQGQQG PRPGIRRGAG AQGQQPVPPF
501: QQQIVPRGRM YRYPTGRNMP EAPAMPGVAG GMMQAYDMGG FPVRDAALSP AAQIGTLTSA LANANPEQQR TILGENLYPL VEQLEPNQAA KVTGMLLEMD
601: QTEVLHLLES PDALKSKVAE AMDVLHNVAH QQNANTPTSQ LAALSLTEGI IS
001: MAAAVATGVA PATMVDQVPS PTAQTSVQVP VSIPLPSPVV VADQTHPNSS LYAGDLDPKV TEAHLFDLFK HVANVVSVRV CRDQNRRSLG YAYINFSNPN
101: DAYRAMEALN YTPLFDRPIR IMLSNRDPST RLSGKGNIFI KNLDASIDNK ALFETFSSFG TILSCKVAMD VTGRSKGYGF VQFEKEESAQ AAIDKLNGML
201: MNDKQVFVGH FIRRQERARD ENTPTPRFTN VYVKNLPKEI GEDELRKTFG KFGVISSAVV MRDQSGNSRC FGFVNFECTE AAASAVEKMN GISLGDDVLY
301: VGRAQKKSER EEELRRKFEQ ERINRFEKSQ GANLYLKNLD DSVDDEKLKE MFSEYGNVTS SKVMLNPQGM SRGFGFVAYS NPEEALRALS EMNGKMIGRK
401: PLYIALAQRK EDRRAHLQAL FSQIRAPGPM SGFHHPPGGP MPGPPQHMYV GQNGASMVPS QPIGYGFQPQ FMPGMRPGSG PGNFIVPYPL QRQPQTGPRM
501: GFRRGATNVQ QHIQQQQLMH RNPSPGMRYM NGASNGRNGM DSSVPQGILP PIIPLPIDAS SISHQKAPLL PISKLTSSLA SASPADRTRM LGEQLYPLVE
601: RHEPLHVAKV TGMLLEMDQA EILHLMESPE ALKSKVSEAL DVLRLSVDPT DHDLGFSTTD
101: DAYRAMEALN YTPLFDRPIR IMLSNRDPST RLSGKGNIFI KNLDASIDNK ALFETFSSFG TILSCKVAMD VTGRSKGYGF VQFEKEESAQ AAIDKLNGML
201: MNDKQVFVGH FIRRQERARD ENTPTPRFTN VYVKNLPKEI GEDELRKTFG KFGVISSAVV MRDQSGNSRC FGFVNFECTE AAASAVEKMN GISLGDDVLY
301: VGRAQKKSER EEELRRKFEQ ERINRFEKSQ GANLYLKNLD DSVDDEKLKE MFSEYGNVTS SKVMLNPQGM SRGFGFVAYS NPEEALRALS EMNGKMIGRK
401: PLYIALAQRK EDRRAHLQAL FSQIRAPGPM SGFHHPPGGP MPGPPQHMYV GQNGASMVPS QPIGYGFQPQ FMPGMRPGSG PGNFIVPYPL QRQPQTGPRM
501: GFRRGATNVQ QHIQQQQLMH RNPSPGMRYM NGASNGRNGM DSSVPQGILP PIIPLPIDAS SISHQKAPLL PISKLTSSLA SASPADRTRM LGEQLYPLVE
601: RHEPLHVAKV TGMLLEMDQA EILHLMESPE ALKSKVSEAL DVLRLSVDPT DHDLGFSTTD
Arabidopsis Description
PAB3Polyadenylate-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O64380]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.