Factsheet for HORVU2Hr1G087390.3

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

plastid 1
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G014800.1
HORVU5Hr1G029110.1
HORVU7Hr1G056460.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34110.1	HORVU4Hr1G014800.1	AT2G43970.1	21798944
AT4G34110.1	HORVU5Hr1G029110.1	AT2G43970.1	21798944
AT4G34110.1	HORVU7Hr1G056460.1	AT2G43970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G378400.1	Wheat	nucleus	98.36	90.38
TraesCS2D01G358000.1	Wheat	cytosol	98.04	90.21
TraesCS2A01G359000.1	Wheat	cytosol	97.87	89.92
Os04t0504800-01	Rice	plasma membrane	86.74	80.42
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	85.43	80.06
EES12460	Sorghum	plastid	86.42	79.52
Zm00001d025801_P005	Maize	cytosol, plastid	84.78	79.45
VIT_18s0001g10170.t01	Wine grape	cytosol	73.49	70.16
GSMUA_Achr9P00990_001	Banana	cytosol	72.67	68.2
KRH70673	Soybean	nucleus	71.52	67.44
GSMUA_Achr4P09890_001	Banana	cytosol	71.85	67.33
KRH15385	Soybean	nucleus	71.36	66.87
KRH50336	Soybean	cytosol	71.19	66.82
VIT_07s0031g00210.t01	Wine grape	cytosol	71.36	66.67
GSMUA_AchrUn_...	Banana	cytosol	71.03	66.56
KRH05656	Soybean	endoplasmic reticulum, nucleus	70.54	65.9
CDY62723	Canola	cytosol	65.79	65.15
Bra034603.1-P	Field mustard	cytosol, plastid	65.79	64.94
CDY51957	Canola	cytosol, plastid	65.63	64.78
Bra011488.1-P	Field mustard	cytosol, plastid	63.83	63.62
CDX69025	Canola	nucleus, plastid	63.34	63.34
CDX75397	Canola	nucleus, plastid	63.67	63.15
CDY67364	Canola	nucleus	30.28	63.14
CDX89664	Canola	cytosol	63.34	63.03
AT4G34110.1	Thale cress	cytosol	64.65	62.8
CDY54068	Canola	cytosol	67.1	62.79
KRH52023	Soybean	cytosol, endoplasmic reticulum	64.65	62.7
Bra018797.1-P	Field mustard	cytosol	66.94	62.63
CDY51045	Canola	cytosol	66.94	62.63
CDX71223	Canola	cytosol	64.81	62.07
KRH61326	Soybean	cytosol, endoplasmic reticulum	63.99	62.06
Bra013104.1-P	Field mustard	cytosol	62.36	61.85
AT1G49760.1	Thale cress	cytosol	66.12	60.21
CDX79296	Canola	plastid	18.0	60.11
CDY36634	Canola	nucleus	62.68	59.01
Bra015220.1-P	Field mustard	cytosol	55.48	58.65
HORVU5Hr1G050560.1	Barley	plastid	66.78	58.12
HORVU7Hr1G063970.1	Barley	cytosol, nucleus, plastid	66.61	56.84
CDY67365	Canola	plastid	27.0	56.51
PGSC0003DMT400012508	Potato	nucleus	11.13	54.84
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	69.39	53.88
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	56.3	53.09
Bra022413.1-P	Field mustard	cytosol	32.08	43.95
CDX92325	Canola	nucleus	21.93	41.61
HORVU4Hr1G059070.1	Barley	cytosol	37.48	35.02
CDX91689	Canola	nucleus	16.69	33.44
HORVU1Hr1G038240.1	Barley	nucleus	17.18	28.53
HORVU4Hr1G075700.5	Barley	nucleus	15.88	23.32
HORVU4Hr1G033990.7	Barley	golgi, nucleus	14.4	20.05
HORVU6Hr1G048390.1	Barley	cytoskeleton, nucleus, peroxisome	13.42	19.66
HORVU5Hr1G069180.3	Barley	nucleus, peroxisome, plastid	13.91	19.63
HORVU2Hr1G106810.1	Barley	nucleus	14.24	18.83
HORVU2Hr1G078910.4	Barley	mitochondrion, nucleus	13.09	18.74
HORVU2Hr1G064650.4	Barley	nucleus	10.31	18.48
HORVU7Hr1G066510.3	Barley	plastid	12.93	18.08
HORVU2Hr1G031260.2	Barley	nucleus, plastid	14.24	17.5
HORVU7Hr1G052090.3	Barley	nucleus	13.58	16.8
Solyc06g062680.1.1	Tomato	cytosol	14.24	16.38
HORVU2Hr1G046380.2	Barley	nucleus	11.13	15.42
HORVU2Hr1G122920.2	Barley	nucleus	16.2	9.78
HORVU2Hr1G123110.1	Barley	nucleus, plastid	16.53	9.5

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	UniProt:A0A287ITA6	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
EnsemblPlantsGene:HORVU2Hr1G087390	EnsemblPlants:HORVU2Hr1G087390.3	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	PFscan:PS50102
PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF678	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk
SMART:SM00360	SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628
UniParc:UPI000B4835AF	SEG:seg	:	:	:	:

Description

Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A287ITA6]

Coordinates

chrchr2H:+:627650341..627655017

Molecular Weight (calculated)

67566.0 Da

IEP (calculated)

9.476

GRAVY (calculated)

-0.528

Length

611 amino acids

Sequence
(BLAST)

001: SQLYELFSQA GQVVSVRVCR DVNSRRSLGY AYVNYSNPMD AARAMEALNF APLNNKPIRV MYSNRDPSSR RSGSANIFIK NLDKTIDNKT LHDTFSAFGA
101: ILSCKVAMDD IGQSKGFGFV QYEKEESAQS AMKSLNGMLI NDKPVYVGPF LRKQERDNSS DKAKFNNVFV KNLSESTTKE DLIKVFSEYG TITSAVVMIG
201: MDGKSRCFGF VNFESPDDAA RAVEELNGKK INDKEWYVGR AQKKSEREMD LKRRFEQSMK DAADKYQGQN LYLKNLDDGI TDDQLRELFS NFGKITSCKI
301: MRDQNGVSKG SGFVSFSTRE EASQALTEMN GKMISGKPLY VAFAQRKEER KAMLQAQFSQ MRPVPMTPSM TPRLPMYPPM PTLGQQLFYG QAPPAMMPPQ
401: PGYGFQQQLV PGMRPGGGAH MPNYFVPVVQ PGQQGPRPGM RRSGPGSAQG QQTPQPFQQQ MVPRGRVYRY PPGPRHMAEV QQMPGVGVGG MVQPYDMGSF
501: PVRDAGVSPA PPIGTLTSAL ANATPEQQRT ILGESLYPLV EKLEHQQAAK VTGMLLEMDQ TEVLHLLESP EALKSKVAEA MDVLRNVAQQ QNPNAPTSQL
601: AGLSLSDGII S

Best Arabidopsis Sequence Match ( AT1G49760.1 )
(BLAST)

001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P

Arabidopsis Description

PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.