Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013104.1-P | Field mustard | cytosol | 96.25 | 95.94 |
| CDY67364 | Canola | nucleus | 44.46 | 93.17 |
| CDY67365 | Canola | plastid | 43.81 | 92.12 |
| CDX71223 | Canola | cytosol | 87.3 | 84.01 |
| CDX79295 | Canola | cytosol, plastid | 13.68 | 84.0 |
| CDX75397 | Canola | nucleus, plastid | 81.27 | 81.01 |
| CDY36634 | Canola | nucleus | 85.5 | 80.89 |
| CDX69025 | Canola | nucleus, plastid | 80.29 | 80.69 |
| CDY08990 | Canola | cytosol | 12.87 | 79.8 |
| CDY62723 | Canola | cytosol | 79.15 | 78.77 |
| CDY51957 | Canola | cytosol, plastid | 79.32 | 78.68 |
| KRH50336 | Soybean | cytosol | 75.57 | 71.28 |
| CDY54068 | Canola | cytosol | 75.57 | 71.06 |
| KRH70673 | Soybean | nucleus | 74.92 | 70.99 |
| CDY51045 | Canola | cytosol | 75.08 | 70.6 |
| CDX79296 | Canola | plastid | 21.01 | 70.49 |
| CDY37229 | Canola | cytosol | 24.1 | 69.48 |
| PGSC0003DMT400066245 | Potato | extracellular | 72.48 | 69.21 |
| Solyc01g107870.2.1 | Tomato | extracellular | 72.31 | 69.05 |
| HORVU2Hr1G087390.3 | Barley | cytosol, mitochondrion, nucleus | 63.03 | 63.34 |
| GSMUA_Achr9P00990_001 | Banana | cytosol | 67.1 | 63.29 |
| TraesCS5B01G159400.1 | Wheat | cytosol | 66.94 | 63.13 |
| TraesCS5D01G167000.1 | Wheat | nucleus, unclear | 66.78 | 62.98 |
| GSMUA_Achr4P09890_001 | Banana | cytosol | 66.78 | 62.88 |
| TraesCS5A01G161800.2 | Wheat | nucleus | 66.61 | 62.83 |
| TraesCS7D01G287900.1 | Wheat | cytosol | 64.98 | 62.54 |
| Os09t0115400-01 | Rice | nucleus | 67.43 | 62.54 |
| Os08t0314800-02 | Rice | cytosol, nucleus, plasma membrane | 67.1 | 62.42 |
| Zm00001d003106_P003 | Maize | extracellular, mitochondrion, plasma membrane | 65.64 | 61.81 |
| KXG35258 | Sorghum | cytosol | 65.96 | 61.74 |
| Os04t0504800-01 | Rice | plasma membrane | 65.8 | 61.3 |
| Zm00001d005276_P007 | Maize | cytosol | 65.15 | 61.16 |
| GSMUA_AchrUn_... | Banana | cytosol | 64.82 | 61.04 |
| EES12460 | Sorghum | plastid | 65.8 | 60.84 |
| TraesCS2D01G358000.1 | Wheat | cytosol | 65.8 | 60.84 |
| TraesCS2A01G359000.1 | Wheat | cytosol | 65.8 | 60.75 |
| TraesCS7A01G288700.1 | Wheat | nucleus | 65.47 | 60.73 |
| Zm00001d019824_P004 | Maize | cytosol | 64.82 | 60.67 |
| TraesCS2B01G378400.1 | Wheat | nucleus | 65.64 | 60.6 |
| Zm00001d025801_P005 | Maize | cytosol, plastid | 64.33 | 60.58 |
| GSMUA_Achr4P20270_001 | Banana | cytosol | 63.35 | 60.5 |
| CDX89562 | Canola | nucleus | 62.54 | 59.53 |
| CDY46079 | Canola | nucleus | 60.91 | 59.46 |
| CDY38939 | Canola | nucleus | 61.89 | 59.01 |
| CDY67921 | Canola | nucleus | 61.56 | 58.6 |
| HORVU5Hr1G050560.1 | Barley | plastid | 66.94 | 58.55 |
| VIT_03s0063g00070.t01 | Wine grape | cytosol, plastid | 72.48 | 56.54 |
| TraesCS7B01G182800.3 | Wheat | cytosol | 61.89 | 56.3 |
| HORVU7Hr1G063970.1 | Barley | cytosol, nucleus, plastid | 65.15 | 55.87 |
| GSMUA_Achr8P24250_001 | Banana | cytosol, plastid | 53.26 | 50.46 |
| CDY72408 | Canola | plastid | 7.33 | 48.39 |
| CDY41472 | Canola | cytosol, plastid | 50.49 | 48.36 |
| CDY37935 | Canola | nucleus | 50.0 | 47.16 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 49.51 | 46.91 |
| CDY03685 | Canola | nucleus | 48.21 | 46.03 |
| CDX72826 | Canola | plastid | 51.14 | 45.91 |
| CDX96344 | Canola | plastid | 50.98 | 45.76 |
| CDY36684 | Canola | plastid | 49.51 | 45.71 |
| GSMUA_Achr7P05430_001 | Banana | nucleus | 66.94 | 45.46 |
| CDX92325 | Canola | nucleus | 22.96 | 43.79 |
| CDY57754 | Canola | nucleus | 14.01 | 40.38 |
| CDY33264 | Canola | mitochondrion, nucleus | 13.03 | 40.0 |
| CDY30168 | Canola | cytosol | 31.43 | 35.87 |
| CDY56198 | Canola | cytosol | 28.18 | 35.38 |
| CDX91689 | Canola | nucleus | 16.12 | 32.46 |
| CDY59539 | Canola | nucleus | 16.12 | 27.05 |
| CDY43894 | Canola | nucleus | 15.8 | 26.65 |
| CDY66740 | Canola | nucleus | 16.29 | 26.25 |
| CDY67617 | Canola | nucleus | 16.29 | 26.25 |
| CDY13992 | Canola | nucleus | 17.26 | 25.3 |
| CDY06734 | Canola | mitochondrion | 12.38 | 24.92 |
| CDX92537 | Canola | nucleus | 16.94 | 24.82 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 16.78 | 23.95 |
| CDY34835 | Canola | nucleus | 15.31 | 23.92 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 16.61 | 23.72 |
| CDY17286 | Canola | nucleus | 15.31 | 23.21 |
| CDX89287 | Canola | nucleus | 15.47 | 22.95 |
| CDX95176 | Canola | nucleus | 15.47 | 22.67 |
| CDY14290 | Canola | nucleus | 15.31 | 22.54 |
| CDY19874 | Canola | nucleus | 15.31 | 22.43 |
| CDY29263 | Canola | nucleus | 15.31 | 22.43 |
| CDY46671 | Canola | nucleus | 15.64 | 22.38 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 15.47 | 22.3 |
| CDY52067 | Canola | nucleus | 14.98 | 21.96 |
| CDY66423 | Canola | nucleus | 15.15 | 21.83 |
| CDY61476 | Canola | nucleus | 14.82 | 21.72 |
| CDX99265 | Canola | nucleus | 14.98 | 21.7 |
| CDY16528 | Canola | nucleus | 14.98 | 21.7 |
| CDY02486 | Canola | nucleus | 14.82 | 21.67 |
| CDY22988 | Canola | nucleus | 14.82 | 21.67 |
| CDY32840 | Canola | nucleus | 14.82 | 21.62 |
| CDX92304 | Canola | nucleus | 14.82 | 21.46 |
| CDX95462 | Canola | nucleus | 15.15 | 21.43 |
| CDY18570 | Canola | nucleus | 15.15 | 21.43 |
| CDY51403 | Canola | nucleus | 14.66 | 21.43 |
| CDY33092 | Canola | nucleus | 14.82 | 21.41 |
| CDY50959 | Canola | nucleus | 14.98 | 21.4 |
| CDY63384 | Canola | mitochondrion, nucleus | 14.5 | 21.29 |
| CDY28101 | Canola | nucleus | 14.82 | 21.21 |
| CDX82310 | Canola | nucleus | 14.17 | 21.12 |
| CDY29341 | Canola | nucleus | 14.01 | 20.53 |
| CDY68866 | Canola | nucleus | 13.84 | 20.48 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 15.8 | 19.13 |
| CDX81822 | Canola | mitochondrion, nucleus | 14.82 | 16.7 |
Protein Annotations
| Gene3D:1.10.1900.10 | MapMan:17.4.2.5 | Gene3D:3.30.70.330 | GO:A0A078DM89 | EnsemblPlants:CDX89664 | ProteinID:CDX89664 |
| ProteinID:CDX89664.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00150056001 |
| InterPro:IPR000504 | InterPro:IPR002004 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:PABP-dom | InterPro:PABP_1234 |
| InterPro:PABP_HYD | PFAM:PF00076 | PFAM:PF00658 | PFscan:PS50102 | PFscan:PS51309 | PANTHER:PTHR24012 |
| PANTHER:PTHR24012:SF349 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00360 | SMART:SM00361 |
| SMART:SM00517 | SUPFAM:SSF54928 | SUPFAM:SSF63570 | TIGRFAMs:TIGR01628 | UniParc:UPI0004EB1B94 | SEG:seg |
Description
BnaC03g45780D
Coordinates
chrLK031860:+:615960..619676
Molecular Weight (calculated)
67117.9 Da
IEP (calculated)
7.953
GRAVY (calculated)
-0.480
Length
614 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQSQTPNGS VLPVGLGAAG AQFGTTSLYV GDLDASVTDS QLFDAFSQMG QVVSVRVCRD LATRRSLGYG YVNFTTPQDA ARAIQELNYI SLNGKPVRVM
101: YSHRDPSVRR SGAGNIFIKN LDKSIDHKAL HDTFSAFGNI ISCKVALDSS GQSKGYGFVQ YETEESAQRA TAELNGMLLN DKQVYVGPFL RRQERDSNTA
201: ANVTKFTNVY VKNLAESTTD EDLKSAFGEF GEITSAVVMR DGDGKSKGFG FVNFEDAGDA AKAVEGLNGK TFGDKEWYVG RAQKKSERES ELKVRYEESL
301: REAADKFQSC NLYVKNLDES ISDEKLKEMF APCGTVTSSK VMRDTNGISR GAGFVAFSTP EEATKAMSEM SGKMIENKPL YVAVAQRKED RRARLQAQFS
401: QMRPMAMPPA VGPRVQMYPP GGPRIGQQMF YGQGPPTMIP QQPGFGYQQQ LVPGMRPGGA PPMQNFFMPM VQQGQQRPGG RRPVGIQPQQ HQMQPRGRMF
501: RYPQGRGSGD VPGRLPYEMP QHVPIGALAT SLANASPEHQ RTMLGENLYP LVEQLEAESA AKVTGMLLEM DQTEVLHLLE SPEALKAKVA EAMDVLRNVA
601: AGGAAEQLSS LNLN
101: YSHRDPSVRR SGAGNIFIKN LDKSIDHKAL HDTFSAFGNI ISCKVALDSS GQSKGYGFVQ YETEESAQRA TAELNGMLLN DKQVYVGPFL RRQERDSNTA
201: ANVTKFTNVY VKNLAESTTD EDLKSAFGEF GEITSAVVMR DGDGKSKGFG FVNFEDAGDA AKAVEGLNGK TFGDKEWYVG RAQKKSERES ELKVRYEESL
301: REAADKFQSC NLYVKNLDES ISDEKLKEMF APCGTVTSSK VMRDTNGISR GAGFVAFSTP EEATKAMSEM SGKMIENKPL YVAVAQRKED RRARLQAQFS
401: QMRPMAMPPA VGPRVQMYPP GGPRIGQQMF YGQGPPTMIP QQPGFGYQQQ LVPGMRPGGA PPMQNFFMPM VQQGQQRPGG RRPVGIQPQQ HQMQPRGRMF
501: RYPQGRGSGD VPGRLPYEMP QHVPIGALAT SLANASPEHQ RTMLGENLYP LVEQLEAESA AKVTGMLLEM DQTEVLHLLE SPEALKAKVA EAMDVLRNVA
601: AGGAAEQLSS LNLN
001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
Arabidopsis Description
PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.