Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039195.1-P | Field mustard | cytosol, nucleus, plastid | 98.41 | 98.88 |
| CDY67921 | Canola | nucleus | 93.64 | 91.32 |
| CDY38939 | Canola | nucleus | 83.47 | 81.52 |
| CDX89562 | Canola | nucleus | 83.47 | 81.4 |
| AT2G23350.1 | Thale cress | nucleus | 80.45 | 76.44 |
| CDX79295 | Canola | cytosol, plastid | 9.86 | 62.0 |
| CDY67365 | Canola | plastid | 28.78 | 61.99 |
| CDX69025 | Canola | nucleus, plastid | 59.78 | 61.54 |
| CDY62723 | Canola | cytosol | 60.1 | 61.26 |
| CDY51957 | Canola | cytosol, plastid | 60.1 | 61.07 |
| CDX89664 | Canola | cytosol | 59.46 | 60.91 |
| CDY08990 | Canola | cytosol | 9.54 | 60.61 |
| CDX75397 | Canola | nucleus, plastid | 59.3 | 60.55 |
| CDX71223 | Canola | cytosol | 59.46 | 58.62 |
| CDY36634 | Canola | nucleus | 58.66 | 56.86 |
| CDY54068 | Canola | cytosol | 58.66 | 56.51 |
| CDY51045 | Canola | cytosol | 58.51 | 56.36 |
| CDY67364 | Canola | nucleus | 26.07 | 55.97 |
| CDX79296 | Canola | plastid | 15.42 | 53.01 |
| CDY72408 | Canola | plastid | 7.0 | 47.31 |
| CDY37229 | Canola | cytosol | 15.9 | 46.95 |
| CDY41472 | Canola | cytosol, plastid | 47.54 | 46.65 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 47.06 | 45.68 |
| CDX72826 | Canola | plastid | 49.28 | 45.32 |
| CDY37935 | Canola | nucleus | 46.9 | 45.31 |
| CDX96344 | Canola | plastid | 49.13 | 45.18 |
| CDY36684 | Canola | plastid | 47.54 | 44.96 |
| CDY03685 | Canola | nucleus | 45.15 | 44.17 |
| CDY33264 | Canola | mitochondrion, nucleus | 12.88 | 40.5 |
| CDX92325 | Canola | nucleus | 20.19 | 39.44 |
| CDY57754 | Canola | nucleus | 13.2 | 38.97 |
| CDX91689 | Canola | nucleus | 17.01 | 35.08 |
| CDY30168 | Canola | cytosol | 28.93 | 33.83 |
| CDY56198 | Canola | cytosol | 25.28 | 32.52 |
| CDY67617 | Canola | nucleus | 17.01 | 28.08 |
| CDY66740 | Canola | nucleus | 17.01 | 28.08 |
| CDY43894 | Canola | nucleus | 16.06 | 27.75 |
| CDY59539 | Canola | nucleus | 16.06 | 27.6 |
| CDY06734 | Canola | mitochondrion | 11.61 | 23.93 |
| CDY17286 | Canola | nucleus | 14.94 | 23.21 |
| CDX89287 | Canola | nucleus | 15.26 | 23.19 |
| CDX95176 | Canola | nucleus | 15.26 | 22.91 |
| CDY14290 | Canola | nucleus | 15.1 | 22.78 |
| CDY61476 | Canola | nucleus | 15.1 | 22.67 |
| CDY34835 | Canola | nucleus | 14.15 | 22.65 |
| CDY02486 | Canola | nucleus | 15.1 | 22.62 |
| CDY46671 | Canola | nucleus | 15.42 | 22.61 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 15.26 | 22.54 |
| CDY63384 | Canola | mitochondrion, nucleus | 14.94 | 22.49 |
| CDY29263 | Canola | nucleus | 14.94 | 22.43 |
| CDY13992 | Canola | nucleus | 14.94 | 22.43 |
| CDY52067 | Canola | nucleus | 14.94 | 22.43 |
| CDY19874 | Canola | nucleus | 14.79 | 22.2 |
| CDY51403 | Canola | nucleus | 14.79 | 22.14 |
| CDY33092 | Canola | nucleus | 14.94 | 22.12 |
| CDY66423 | Canola | nucleus | 14.94 | 22.07 |
| CDX92537 | Canola | nucleus | 14.63 | 21.96 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 14.79 | 21.63 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 14.63 | 21.4 |
| CDY22988 | Canola | nucleus | 13.83 | 20.71 |
| CDX99265 | Canola | nucleus | 13.83 | 20.52 |
| CDX82310 | Canola | nucleus | 13.35 | 20.39 |
| CDX95462 | Canola | nucleus | 13.99 | 20.28 |
| CDY29341 | Canola | nucleus | 13.35 | 20.05 |
| CDX92304 | Canola | nucleus | 13.51 | 20.05 |
| CDY18570 | Canola | nucleus | 13.83 | 20.05 |
| CDY68866 | Canola | nucleus | 13.2 | 20.0 |
| CDY16528 | Canola | nucleus | 13.35 | 19.81 |
| CDY32840 | Canola | nucleus | 13.2 | 19.71 |
| CDY50959 | Canola | nucleus | 13.35 | 19.53 |
| CDY28101 | Canola | nucleus | 13.2 | 19.35 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 14.47 | 17.95 |
| CDX81822 | Canola | mitochondrion, nucleus | 15.26 | 17.61 |
Protein Annotations
| Gene3D:1.10.1900.10 | MapMan:17.4.2.5 | Gene3D:3.30.70.330 | GO:A0A078I9M9 | UniProt:A0A078I9M9 | EnsemblPlants:CDY46079 |
| ProteinID:CDY46079 | ProteinID:CDY46079.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | EnsemblPlantsGene:GSBRNA2T00083231001 | InterPro:IPR000504 |
| InterPro:IPR002004 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:PABP-dom | InterPro:PABP_1234 | InterPro:PABP_HYD |
| PFAM:PF00076 | PFAM:PF00658 | PFscan:PS50102 | PFscan:PS51309 | PANTHER:PTHR24012 | PANTHER:PTHR24012:SF349 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SMART:SM00517 | SUPFAM:SSF54928 | SUPFAM:SSF63570 |
| TIGRFAMs:TIGR01628 | UniParc:UPI0004EF06B3 | SEG:seg | : | : | : |
Description
BnaA09g42030DPolyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A078I9M9]
Coordinates
chrLK032649:-:127021..130337
Molecular Weight (calculated)
68514.4 Da
IEP (calculated)
6.055
GRAVY (calculated)
-0.445
Length
629 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQAPPPSSS PPATNGTTVA SDGLNLGSMC SLYIGDLDFS VTDSQLYDYF TKVCQVVSVR VCRDSATNAS LGYGYVNYCN IDDAEKAIKK LNFTHLNGKM
101: IRVTHSTRDN AARRSGVGNL FVKNLDKSVD NKTLHDTFSE CGNIVSCKVA TDHMGQSRGY GFVQFESEDS AKTATEKLNG RLLNDKEIFV GPFLRKEERE
201: SASDKTKFTN VYVKNLSETT TDDELKAAFG EYGGISSAVV MKDGDGKSRC FGFVNFEDAG DAARAVEGLN GKKFDDDKEW YVGKAQKKSE REVELSRRYE
301: QGVRETAGNG FDGLNLYVKN LDETVTDEKL RELFAEFGTV TSCKVMRDPS GISKGSGFVA LSAASEPSRV LNEMNGKMVS GKPLYVSLAQ RKEERRATLQ
401: AQFSQMRPAF VPGMSPSMPI FPGGGAPGIG QPMFYGQGPP LIIPQQGGFG YPPQMVPGMR PGFFGPMMQQ GPRPGDGPMR HQPEQPMPFM QPQMMPRGRG
501: YRYPPGRNMP EDLMPGGRVP LPFDTNGVPL GQHLDADALS SSLASSLAQA SPAQQRTLLG ESLYPLVNLI EHVNAAKVTG MLLEMDQTEV LHLLESPEAL
601: NAKVSEALDV LRNVNQPSDL LAALTIHDH
101: IRVTHSTRDN AARRSGVGNL FVKNLDKSVD NKTLHDTFSE CGNIVSCKVA TDHMGQSRGY GFVQFESEDS AKTATEKLNG RLLNDKEIFV GPFLRKEERE
201: SASDKTKFTN VYVKNLSETT TDDELKAAFG EYGGISSAVV MKDGDGKSRC FGFVNFEDAG DAARAVEGLN GKKFDDDKEW YVGKAQKKSE REVELSRRYE
301: QGVRETAGNG FDGLNLYVKN LDETVTDEKL RELFAEFGTV TSCKVMRDPS GISKGSGFVA LSAASEPSRV LNEMNGKMVS GKPLYVSLAQ RKEERRATLQ
401: AQFSQMRPAF VPGMSPSMPI FPGGGAPGIG QPMFYGQGPP LIIPQQGGFG YPPQMVPGMR PGFFGPMMQQ GPRPGDGPMR HQPEQPMPFM QPQMMPRGRG
501: YRYPPGRNMP EDLMPGGRVP LPFDTNGVPL GQHLDADALS SSLASSLAQA SPAQQRTLLG ESLYPLVNLI EHVNAAKVTG MLLEMDQTEV LHLLESPEAL
601: NAKVSEALDV LRNVNQPSDL LAALTIHDH
001: MAQVQAPSSH SPPPPAVVND GAATASATPG IGVGGGGDGV THGALCSLYV GDLDFNVTDS QLYDYFTEVC QVVSVRVCRD AATNTSLGYG YVNYSNTDDA
101: EKAMQKLNYS YLNGKMIRIT YSSRDSSARR SGVGNLFVKN LDKSVDNKTL HEAFSGCGTI VSCKVATDHM GQSRGYGFVQ FDTEDSAKNA IEKLNGKVLN
201: DKQIFVGPFL RKEERESAAD KMKFTNVYVK NLSEATTDDE LKTTFGQYGS ISSAVVMRDG DGKSRCFGFV NFENPEDAAR AVEALNGKKF DDKEWYVGKA
301: QKKSERELEL SRRYEQGSSD GGNKFDGLNL YVKNLDDTVT DEKLRELFAE FGTITSCKVM RDPSGTSKGS GFVAFSAASE ASRVLNEMNG KMVGGKPLYV
401: ALAQRKEERR AKLQAQFSQM RPAFIPGVGP RMPIFTGGAP GLGQQIFYGQ GPPPIIPHQP GFGYQPQLVP GMRPAFFGGP MMQPGQQGPR PGGRRSGDGP
501: MRHQHQQPMP YMQPQMMPRG RGYRYPSGGR NMPDGPMPGG MVPVAYDMNV MPYSQPMSAG QLATSLANAT PAQQRTLLGE SLYPLVDQIE SEHAAKVTGM
601: LLEMDQTEVL HLLESPEALN AKVSEALDVL RNVNQPSSQG SEGNKSGSPS DLLASLSIND HL
101: EKAMQKLNYS YLNGKMIRIT YSSRDSSARR SGVGNLFVKN LDKSVDNKTL HEAFSGCGTI VSCKVATDHM GQSRGYGFVQ FDTEDSAKNA IEKLNGKVLN
201: DKQIFVGPFL RKEERESAAD KMKFTNVYVK NLSEATTDDE LKTTFGQYGS ISSAVVMRDG DGKSRCFGFV NFENPEDAAR AVEALNGKKF DDKEWYVGKA
301: QKKSERELEL SRRYEQGSSD GGNKFDGLNL YVKNLDDTVT DEKLRELFAE FGTITSCKVM RDPSGTSKGS GFVAFSAASE ASRVLNEMNG KMVGGKPLYV
401: ALAQRKEERR AKLQAQFSQM RPAFIPGVGP RMPIFTGGAP GLGQQIFYGQ GPPPIIPHQP GFGYQPQLVP GMRPAFFGGP MMQPGQQGPR PGGRRSGDGP
501: MRHQHQQPMP YMQPQMMPRG RGYRYPSGGR NMPDGPMPGG MVPVAYDMNV MPYSQPMSAG QLATSLANAT PAQQRTLLGE SLYPLVDQIE SEHAAKVTGM
601: LLEMDQTEVL HLLESPEALN AKVSEALDVL RNVNQPSSQG SEGNKSGSPS DLLASLSIND HL
Arabidopsis Description
PAB4Polyadenylate-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:O22173]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.