CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70811
CDX92658
CDY03412
CDY11039
CDY34317
CDY51233

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G23350.1	CDX70811	AT4G24840.1	21798944
AT2G23350.1	CDX92658	AT4G24840.1	21798944
AT2G23350.1	CDY03412	AT4G24840.1	21798944
AT2G23350.1	CDY11039	AT4G24840.1	21798944
AT2G23350.1	CDY34317	AT4G24840.1	21798944
AT2G23350.1	CDY51233	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38939	Canola	nucleus	98.14	98.29
CDY67921	Canola	nucleus	85.74	85.74
AT2G23350.1	Thale cress	nucleus	87.75	85.5
CDY46079	Canola	nucleus	81.4	83.47
CDX79295	Canola	cytosol, plastid	10.54	68.0
CDY08990	Canola	cytosol	10.08	65.66
CDY62723	Canola	cytosol	61.09	63.86
CDY51957	Canola	cytosol, plastid	61.09	63.65
CDX75397	Canola	nucleus, plastid	60.62	63.47
CDX69025	Canola	nucleus, plastid	60.0	63.34
CDX89664	Canola	cytosol	59.53	62.54
CDY67365	Canola	plastid	27.91	61.64
CDX71223	Canola	cytosol	60.78	61.44
CDY54068	Canola	cytosol	61.55	60.8
CDY51045	Canola	cytosol	61.4	60.64
CDY67364	Canola	nucleus	27.29	60.07
CDY36634	Canola	nucleus	59.69	59.32
CDX79296	Canola	plastid	16.74	59.02
CDY37229	Canola	cytosol	17.36	52.58
CDY41472	Canola	cytosol, plastid	47.44	47.74
CDY72408	Canola	plastid	6.82	47.31
CDX68303	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	46.98	46.76
CDY36684	Canola	plastid	47.6	46.17
CDY37935	Canola	nucleus	46.2	45.78
CDX96344	Canola	plastid	48.53	45.76
CDX72826	Canola	plastid	48.22	45.47
CDY03685	Canola	nucleus	44.5	44.63
CDX92325	Canola	nucleus	20.78	41.61
CDY33264	Canola	mitochondrion, nucleus	12.87	41.5
CDY57754	Canola	nucleus	13.33	40.38
CDX91689	Canola	nucleus	16.43	34.75
CDY30168	Canola	cytosol	28.84	34.57
CDY56198	Canola	cytosol	25.58	33.74
CDY67617	Canola	nucleus	17.05	28.87
CDY66740	Canola	nucleus	17.05	28.87
CDY59539	Canola	nucleus	16.28	28.69
CDY43894	Canola	nucleus	16.12	28.57
CDY06734	Canola	mitochondrion	12.71	26.89
CDY34835	Canola	nucleus	15.66	25.7
CDY17286	Canola	nucleus	15.35	24.44
CDX95176	Canola	nucleus	15.81	24.34
CDX89287	Canola	nucleus	15.5	24.15
CDY52067	Canola	nucleus	15.66	24.11
CDY13992	Canola	nucleus	15.66	24.11
CDY14290	Canola	nucleus	15.5	23.98
CDX70874	Canola	cytosol, nucleus, peroxisome	15.97	23.95
CDX88893	Canola	cytosol, nucleus, peroxisome	15.81	23.72
CDY61476	Canola	nucleus	15.35	23.63
CDY19874	Canola	nucleus	15.35	23.63
CDX92537	Canola	nucleus	15.35	23.63
CDY02486	Canola	nucleus	15.35	23.57
CDY63384	Canola	mitochondrion, nucleus	15.19	23.45
CDY29263	Canola	nucleus	15.19	23.39
CDY51403	Canola	nucleus	15.19	23.33
CDY46671	Canola	nucleus	15.5	23.31
CDY33092	Canola	nucleus	15.35	23.29
CDX92786	Canola	mitochondrion, nucleus, peroxisome	15.35	23.24
CDY66423	Canola	nucleus	15.35	23.24
CDY16528	Canola	nucleus	14.73	22.41
CDX95462	Canola	nucleus	15.04	22.35
CDY32840	Canola	nucleus	14.57	22.33
CDY50959	Canola	nucleus	14.73	22.09
CDY68866	Canola	nucleus	14.11	21.93
CDY28101	Canola	nucleus	14.57	21.91
CDY22988	Canola	nucleus	14.26	21.9
CDY18570	Canola	nucleus	14.73	21.89
CDY29341	Canola	nucleus	14.11	21.72
CDX82310	Canola	nucleus	13.8	21.6
CDX99265	Canola	nucleus	14.11	21.46
CDX92304	Canola	nucleus	13.8	20.99
CDY34639	Canola	nucleus, plastid, vacuole	15.97	20.32
CDX81822	Canola	mitochondrion, nucleus	15.5	18.35

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	GO:A0A078DL30	EnsemblPlants:CDX89562	ProteinID:CDX89562
ProteinID:CDX89562.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	EnsemblPlantsGene:GSBRNA2T00149889001	InterPro:Hud_Sxl_RNA	InterPro:IPR000504
InterPro:IPR002004	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD
PFAM:PF00076	PFAM:PF00658	PRINTS:PR00961	PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012
PANTHER:PTHR24012:SF349	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361
SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI0004EE87E1	SEG:seg

Description

BnaC04g35810D

Coordinates

chrLK031859:+:1200485..1203449

Molecular Weight (calculated)

70172.3 Da

IEP (calculated)

7.459

GRAVY (calculated)

-0.512

Length

645 amino acids

Sequence
(BLAST)

001: MAQVQAQAPS SSSPPPPVTD GTVASDGVNL GAMCSLYVGD LDFNVTDSQL YDYFTEVCQV VSVRVCRDTA TNTSLGYGYV NYSNIDDAEK ALKKLNYTSL
101: NGKMIRVTYS SRDSAARRSG IGNLFIKNLD KSVDNKTLHE TFSGCGSIVS CKVATDHMGQ SKGYGFVQFE SEDSAKSAIE KLNGKILNDK QIFVGPFLKK
201: EERESAADKM KFTNVYVKNL SENTTDDELK STFGQYGGIS SAVVMRDGDG RSRCFGFVNF ENAEDAARAV EGLNGKKFDD KEWYVGKAQK KSERELELSR
301: RYEQGARETG NSFDGLNLYV KNLDDTVTDE KLRELFAEFG TITSCKVMRD PSGASKGSGF VAFSAASEAS RVLNEMNGKM VSGKPLYVAL AQRKEERRAK
401: LQAQFSQMRP AFIPGMGPRM PMFAGGAPGQ QFFYGQGPPQ MIPHQAGFGY QPQMVPGMRP GYFGPMMQPG QQGPRPGGRR SGDGPMRHQP QQPMPFMQPQ
501: MMAGGGRGYR YPRGRNMPDG PMAGGMVPFP YDINGMPLGQ PMPAGALASS LAQASPAQQR TILGETLYPL VNKIEHENAA KVTGMLLEMD QTEVLHLIES
601: PEALNAKVSE ALDVLRNVNQ PAQGSEGKSG SPSDMLASLS INDHL

Best Arabidopsis Sequence Match ( AT2G23350.1 )
(BLAST)

001: MAQVQAPSSH SPPPPAVVND GAATASATPG IGVGGGGDGV THGALCSLYV GDLDFNVTDS QLYDYFTEVC QVVSVRVCRD AATNTSLGYG YVNYSNTDDA
101: EKAMQKLNYS YLNGKMIRIT YSSRDSSARR SGVGNLFVKN LDKSVDNKTL HEAFSGCGTI VSCKVATDHM GQSRGYGFVQ FDTEDSAKNA IEKLNGKVLN
201: DKQIFVGPFL RKEERESAAD KMKFTNVYVK NLSEATTDDE LKTTFGQYGS ISSAVVMRDG DGKSRCFGFV NFENPEDAAR AVEALNGKKF DDKEWYVGKA
301: QKKSERELEL SRRYEQGSSD GGNKFDGLNL YVKNLDDTVT DEKLRELFAE FGTITSCKVM RDPSGTSKGS GFVAFSAASE ASRVLNEMNG KMVGGKPLYV
401: ALAQRKEERR AKLQAQFSQM RPAFIPGVGP RMPIFTGGAP GLGQQIFYGQ GPPPIIPHQP GFGYQPQLVP GMRPAFFGGP MMQPGQQGPR PGGRRSGDGP
501: MRHQHQQPMP YMQPQMMPRG RGYRYPSGGR NMPDGPMPGG MVPVAYDMNV MPYSQPMSAG QLATSLANAT PAQQRTLLGE SLYPLVDQIE SEHAAKVTGM
601: LLEMDQTEVL HLLESPEALN AKVSEALDVL RNVNQPSSQG SEGNKSGSPS DLLASLSIND HL

Arabidopsis Description

PAB4Polyadenylate-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:O22173]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.