Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16528 | Canola | nucleus | 97.86 | 97.17 |
| CDY50959 | Canola | nucleus | 92.64 | 90.7 |
| CDY28101 | Canola | nucleus | 92.16 | 90.44 |
| CDY68866 | Canola | nucleus | 85.99 | 87.23 |
| CDY29341 | Canola | nucleus | 86.7 | 87.11 |
| AT1G49600.3 | Thale cress | nucleus | 80.28 | 75.11 |
| CDY22988 | Canola | nucleus | 74.11 | 74.29 |
| CDX95462 | Canola | nucleus | 75.77 | 73.5 |
| CDX82310 | Canola | nucleus | 71.73 | 73.3 |
| CDY18570 | Canola | nucleus | 75.53 | 73.27 |
| CDX92304 | Canola | nucleus | 73.63 | 73.11 |
| CDX99265 | Canola | nucleus | 73.63 | 73.11 |
| VIT_03s0063g00850.t01 | Wine grape | nucleus | 63.66 | 64.73 |
| Bra014216.1-P | Field mustard | nucleus | 86.94 | 63.99 |
| Solyc01g108500.2.1 | Tomato | nucleus | 60.81 | 61.99 |
| GSMUA_Achr9P15210_001 | Banana | nucleus | 45.84 | 61.86 |
| KRH50251 | Soybean | nucleus | 62.71 | 61.25 |
| GSMUA_Achr3P06840_001 | Banana | nucleus | 45.37 | 61.22 |
| KRH71168 | Soybean | nucleus | 62.23 | 60.79 |
| PGSC0003DMT400066648 | Potato | nucleus | 60.57 | 60.71 |
| GSMUA_Achr10P... | Banana | nucleus | 44.89 | 60.19 |
| GSMUA_Achr6P10190_001 | Banana | nucleus | 44.42 | 59.74 |
| Solyc10g050860.1.1 | Tomato | nucleus | 59.38 | 58.41 |
| TraesCS5B01G241400.1 | Wheat | nucleus | 47.27 | 58.19 |
| TraesCS5A01G243500.1 | Wheat | nucleus | 47.03 | 57.89 |
| TraesCS5D01G250100.1 | Wheat | nucleus | 47.03 | 57.89 |
| Os02t0567900-01 | Rice | cytosol, nucleus | 33.97 | 55.21 |
| GSMUA_Achr6P09470_001 | Banana | nucleus | 18.76 | 53.74 |
| CDY52067 | Canola | nucleus | 53.44 | 53.7 |
| CDX95176 | Canola | nucleus | 53.21 | 53.46 |
| CDY06734 | Canola | mitochondrion | 37.77 | 52.13 |
| TraesCS6A01G204400.1 | Wheat | mitochondrion | 45.84 | 50.92 |
| Os04t0449900-01 | Rice | plastid | 46.56 | 50.65 |
| GSMUA_Achr3P01720_001 | Banana | mitochondrion | 48.22 | 50.37 |
| Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 49.88 | 49.53 |
| HORVU5Hr1G069180.3 | Barley | nucleus, peroxisome, plastid | 50.83 | 49.42 |
| KXG35789 | Sorghum | nucleus | 50.83 | 48.86 |
| Zm00001d020748_P002 | Maize | plasma membrane | 49.88 | 48.5 |
| CDY34835 | Canola | nucleus | 45.13 | 48.35 |
| HORVU6Hr1G048390.1 | Barley | cytoskeleton, nucleus, peroxisome | 47.03 | 47.48 |
| TraesCS2A01G317700.2 | Wheat | plastid | 47.74 | 47.41 |
| TraesCS2D01G315400.2 | Wheat | plastid | 47.74 | 47.41 |
| TraesCS2B01G335700.1 | Wheat | plastid | 47.27 | 47.38 |
| EES10898 | Sorghum | nucleus | 47.03 | 46.81 |
| CDX89287 | Canola | nucleus | 45.84 | 46.62 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 46.08 | 46.52 |
| CDY17286 | Canola | nucleus | 43.94 | 45.68 |
| CDY14290 | Canola | nucleus | 44.89 | 45.32 |
| EES05289 | Sorghum | plastid | 46.79 | 45.29 |
| Os09t0462700-01 | Rice | mitochondrion, nucleus, plastid | 47.27 | 45.12 |
| CDY29263 | Canola | nucleus | 44.89 | 45.11 |
| CDY66423 | Canola | nucleus | 45.37 | 44.84 |
| CDY46671 | Canola | nucleus | 45.61 | 44.76 |
| Zm00001d050838_P001 | Maize | plastid | 45.61 | 44.65 |
| CDY19874 | Canola | nucleus | 44.18 | 44.39 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 44.89 | 44.37 |
| HORVU2Hr1G078910.4 | Barley | mitochondrion, nucleus | 44.66 | 44.03 |
| TraesCS6B01G228100.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 46.56 | 42.98 |
| Zm00001d025551_P002 | Maize | plastid | 44.89 | 41.81 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 46.56 | 41.35 |
| CDY13992 | Canola | nucleus | 40.38 | 40.57 |
| CDX92537 | Canola | nucleus | 40.14 | 40.33 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 39.91 | 39.07 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 39.91 | 39.07 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 45.37 | 37.67 |
| CDY63384 | Canola | mitochondrion, nucleus | 25.65 | 25.84 |
| CDY51403 | Canola | nucleus | 24.7 | 24.76 |
| CDY33092 | Canola | nucleus | 24.94 | 24.71 |
| CDY61476 | Canola | nucleus | 24.23 | 24.34 |
| CDY02486 | Canola | nucleus | 24.23 | 24.29 |
| CDY67365 | Canola | plastid | 15.91 | 22.95 |
| CDX81822 | Canola | mitochondrion, nucleus | 25.65 | 19.82 |
| CDY72408 | Canola | plastid | 3.56 | 16.13 |
| CDY59539 | Canola | nucleus | 13.54 | 15.57 |
| CDY66740 | Canola | nucleus | 13.78 | 15.22 |
| CDY67617 | Canola | nucleus | 13.78 | 15.22 |
| CDY43894 | Canola | nucleus | 13.06 | 15.11 |
| CDX69025 | Canola | nucleus, plastid | 21.85 | 15.06 |
| CDY57754 | Canola | nucleus | 7.6 | 15.02 |
| CDX75397 | Canola | nucleus, plastid | 21.85 | 14.94 |
| CDY51957 | Canola | cytosol, plastid | 21.85 | 14.86 |
| CDX89664 | Canola | cytosol | 21.62 | 14.82 |
| CDY62723 | Canola | cytosol | 21.62 | 14.75 |
| CDY38939 | Canola | nucleus | 22.33 | 14.6 |
| CDX89562 | Canola | nucleus | 22.33 | 14.57 |
| CDX71223 | Canola | cytosol | 21.85 | 14.42 |
| CDX79296 | Canola | plastid | 6.18 | 14.21 |
| CDY56198 | Canola | cytosol | 16.15 | 13.91 |
| CDY54068 | Canola | cytosol | 21.14 | 13.63 |
| CDY51045 | Canola | cytosol | 20.9 | 13.48 |
| CDY36634 | Canola | nucleus | 20.67 | 13.41 |
| CDY03685 | Canola | nucleus | 20.19 | 13.22 |
| CDY46079 | Canola | nucleus | 19.71 | 13.2 |
| CDX72826 | Canola | plastid | 21.38 | 13.16 |
| CDX96344 | Canola | plastid | 21.38 | 13.16 |
| CDY41472 | Canola | cytosol, plastid | 19.95 | 13.1 |
| CDY30168 | Canola | cytosol | 16.63 | 13.01 |
| CDY37935 | Canola | nucleus | 19.95 | 12.9 |
| CDY36684 | Canola | plastid | 20.19 | 12.78 |
| CDY67921 | Canola | nucleus | 19.48 | 12.71 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 19.48 | 12.65 |
| CDY33264 | Canola | mitochondrion, nucleus | 5.94 | 12.5 |
| CDX92325 | Canola | nucleus | 6.18 | 8.07 |
| CDY67364 | Canola | nucleus | 5.23 | 7.51 |
| CDX91689 | Canola | nucleus | 2.85 | 3.93 |
| CDY37229 | Canola | cytosol | 1.9 | 3.76 |
| CDX79295 | Canola | cytosol, plastid | 0.0 | 0.0 |
| CDY08990 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | GO:A0A078H2J4 | UniProt:A0A078H2J4 | EnsemblPlants:CDY32840 | ProteinID:CDY32840 |
| ProteinID:CDY32840.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00052946001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43955 |
| PANTHER:PTHR43955:SF6 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EED42E |
| SEG:seg | : | : | : | : | : |
Description
BnaC08g02620DBnaC08g02620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H2J4]
Coordinates
chrLK032300:-:344127..348525
Molecular Weight (calculated)
45825.0 Da
IEP (calculated)
6.286
GRAVY (calculated)
-0.640
Length
421 amino acids
Sequence
(BLAST)
(BLAST)
001: MQTTNNGPDS SSAGTTPPPL QQPTPPPPQQ HWQNQQQWMA AMQYPMAVMQ QQHMMMYPHQ YAPYTQGHYQ HPPQFHYVPY HQQQQRGGSG GDDVKTLWVG
101: DLLHWMDETY LHTCFSHTNE VSSVKVIRNK QTNQSEGYGF VEFLSRSAAE EVLQSYSGVT MPNADQPFRL NWASFSTGEK RASENGGPDL SIFVGDLAPD
201: VTDALLLETF AGYQSVKGAK VVIDSNTGRS KGYGFVRFGD EGERSRALTE MNGAFCSSRQ MRVGIATPKR AATYGQQNGS QALTLAGGHG GNGSVSDGDS
301: NNSTIFVGGI DADVTEEDLM QPFSQFGEVV SVKIPVGKGC GFVQFGNRKS AEEAIENLNG TVIGKNTVRL SWGRSPNRQW RGEAGLQWNG GYSRGQGYSN
401: GYANQDSNMY ATAAAAVPGA S
101: DLLHWMDETY LHTCFSHTNE VSSVKVIRNK QTNQSEGYGF VEFLSRSAAE EVLQSYSGVT MPNADQPFRL NWASFSTGEK RASENGGPDL SIFVGDLAPD
201: VTDALLLETF AGYQSVKGAK VVIDSNTGRS KGYGFVRFGD EGERSRALTE MNGAFCSSRQ MRVGIATPKR AATYGQQNGS QALTLAGGHG GNGSVSDGDS
301: NNSTIFVGGI DADVTEEDLM QPFSQFGEVV SVKIPVGKGC GFVQFGNRKS AEEAIENLNG TVIGKNTVRL SWGRSPNRQW RGEAGLQWNG GYSRGQGYSN
401: GYANQDSNMY ATAAAAVPGA S
001: MQTPNNNGST DSVLPPTSAG TTPPPPLQQS TPPPQQQQQQ QWQQQQQWMA AMQQYPAAAM AMMQQQQMMM YPHPQYAPYN QAAYQQHPQF QYAAYQQQQQ
101: QHHQSQQQPR GGSGGDDVKT LWVGDLLHWM DETYLHTCFS HTNEVSSVKV IRNKQTCQSE GYGFVEFLSR SAAEEALQSF SGVTMPNAEQ PFRLNWASFS
201: TGEKRASENG PDLSIFVGDL APDVSDAVLL ETFAGRYPSV KGAKVVIDSN TGRSKGYGFV RFGDENERSR AMTEMNGAFC SSRQMRVGIA TPKRAAAYGQ
301: QNGSQALTLA GGHGGNGSMS DGESNNSTIF VGGLDADVTE EDLMQPFSDF GEVVSVKIPV GKGCGFVQFA NRQSAEEAIG NLNGTVIGKN TVRLSWGRSP
401: NKQWRSDSGN QWNGGYSRGQ GYNNGYANQD SNMYATAAAA VPGAS
101: QHHQSQQQPR GGSGGDDVKT LWVGDLLHWM DETYLHTCFS HTNEVSSVKV IRNKQTCQSE GYGFVEFLSR SAAEEALQSF SGVTMPNAEQ PFRLNWASFS
201: TGEKRASENG PDLSIFVGDL APDVSDAVLL ETFAGRYPSV KGAKVVIDSN TGRSKGYGFV RFGDENERSR AMTEMNGAFC SSRQMRVGIA TPKRAAAYGQ
301: QNGSQALTLA GGHGGNGSMS DGESNNSTIF VGGLDADVTE EDLMQPFSDF GEVVSVKIPV GKGCGFVQFA NRQSAEEAIG NLNGTVIGKN TVRLSWGRSP
401: NKQWRSDSGN QWNGGYSRGQ GYNNGYANQD SNMYATAAAA VPGAS
Arabidopsis Description
ATRBP47ARNA-binding protein 47A [Source:TAIR;Acc:AT1G49600]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.