Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY03685 | Canola | nucleus | 88.48 | 89.58 |
| CDX96344 | Canola | plastid | 84.64 | 80.56 |
| CDX72826 | Canola | plastid | 84.64 | 80.56 |
| CDY36684 | Canola | plastid | 80.34 | 78.65 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 76.96 | 77.31 |
| AT1G71770.1 | Thale cress | cytosol, plastid | 78.49 | 74.93 |
| CDY41472 | Canola | cytosol, plastid | 65.9 | 66.93 |
| CDX91689 | Canola | nucleus | 25.81 | 55.08 |
| CDY67365 | Canola | plastid | 24.27 | 54.11 |
| PGSC0003DMT400064531 | Potato | cytosol | 42.09 | 51.5 |
| CDX75397 | Canola | nucleus, plastid | 47.62 | 50.32 |
| CDX69025 | Canola | nucleus, plastid | 47.16 | 50.25 |
| CDY51957 | Canola | cytosol, plastid | 47.62 | 50.08 |
| CDX79295 | Canola | cytosol, plastid | 7.68 | 50.0 |
| KRG91724 | Soybean | cytosol | 50.08 | 50.0 |
| CDX89664 | Canola | cytosol | 47.16 | 50.0 |
| VIT_18s0001g02490.t01 | Wine grape | plastid | 50.54 | 49.92 |
| CDY62723 | Canola | cytosol | 47.31 | 49.92 |
| CDY08990 | Canola | cytosol | 7.53 | 49.49 |
| CDX71223 | Canola | cytosol | 47.93 | 48.9 |
| CDY54068 | Canola | cytosol | 47.93 | 47.78 |
| CDY51045 | Canola | cytosol | 47.93 | 47.78 |
| CDY36634 | Canola | nucleus | 47.62 | 47.77 |
| KRH08608 | Soybean | endoplasmic reticulum | 48.39 | 47.3 |
| GSMUA_Achr5P24940_001 | Banana | plastid | 48.39 | 47.3 |
| CDY46079 | Canola | nucleus | 45.31 | 46.9 |
| CDX89562 | Canola | nucleus | 45.78 | 46.2 |
| CDY38939 | Canola | nucleus | 45.62 | 46.12 |
| KRH70233 | Soybean | cytosol | 44.09 | 45.63 |
| CDY67921 | Canola | nucleus | 45.16 | 45.58 |
| CDY72408 | Canola | plastid | 6.3 | 44.09 |
| CDY67364 | Canola | nucleus | 19.82 | 44.03 |
| CDX79296 | Canola | plastid | 11.06 | 39.34 |
| CDY33264 | Canola | mitochondrion, nucleus | 11.98 | 39.0 |
| CDY57754 | Canola | nucleus | 12.44 | 38.03 |
| CDX92325 | Canola | nucleus | 17.05 | 34.47 |
| CDY30168 | Canola | cytosol | 27.65 | 33.46 |
| CDY37229 | Canola | cytosol | 10.91 | 33.33 |
| CDY56198 | Canola | cytosol | 24.73 | 32.92 |
| CDY43894 | Canola | nucleus | 13.82 | 24.73 |
| CDY59539 | Canola | nucleus | 13.82 | 24.59 |
| CDY66740 | Canola | nucleus | 14.13 | 24.15 |
| CDY67617 | Canola | nucleus | 14.13 | 24.15 |
| CDY06734 | Canola | mitochondrion | 11.21 | 23.93 |
| CDY17286 | Canola | nucleus | 14.13 | 22.72 |
| CDY19874 | Canola | nucleus | 14.13 | 21.96 |
| CDX89287 | Canola | nucleus | 13.82 | 21.74 |
| CDY13992 | Canola | nucleus | 13.98 | 21.72 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 14.13 | 21.6 |
| CDY29263 | Canola | nucleus | 13.82 | 21.48 |
| CDY46671 | Canola | nucleus | 14.13 | 21.45 |
| CDY34835 | Canola | nucleus | 12.9 | 21.37 |
| CDX92537 | Canola | nucleus | 13.67 | 21.24 |
| CDY14290 | Canola | nucleus | 13.52 | 21.1 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 13.82 | 20.93 |
| CDX99265 | Canola | nucleus | 13.52 | 20.75 |
| CDY18570 | Canola | nucleus | 13.82 | 20.74 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 13.67 | 20.7 |
| CDY66423 | Canola | nucleus | 13.52 | 20.66 |
| CDX92304 | Canola | nucleus | 13.21 | 20.28 |
| CDX95462 | Canola | nucleus | 13.52 | 20.28 |
| CDY16528 | Canola | nucleus | 13.06 | 20.05 |
| CDY22988 | Canola | nucleus | 12.9 | 20.0 |
| CDY32840 | Canola | nucleus | 12.9 | 19.95 |
| CDX82310 | Canola | nucleus | 12.6 | 19.9 |
| CDY29341 | Canola | nucleus | 12.6 | 19.57 |
| CDY61476 | Canola | nucleus | 12.6 | 19.57 |
| CDY50959 | Canola | nucleus | 12.9 | 19.53 |
| CDY02486 | Canola | nucleus | 12.6 | 19.52 |
| CDY28101 | Canola | nucleus | 12.75 | 19.35 |
| CDX95176 | Canola | nucleus | 12.44 | 19.33 |
| CDY68866 | Canola | nucleus | 12.29 | 19.28 |
| CDY52067 | Canola | nucleus | 12.29 | 19.09 |
| CDY33092 | Canola | nucleus | 12.44 | 19.06 |
| CDY51403 | Canola | nucleus | 12.29 | 19.05 |
| CDY63384 | Canola | mitochondrion, nucleus | 12.14 | 18.9 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 13.06 | 16.77 |
| CDX81822 | Canola | mitochondrion, nucleus | 12.6 | 15.05 |
Protein Annotations
| Gene3D:1.10.1900.10 | MapMan:17.4.2.5 | Gene3D:3.30.70.330 | GO:A0A078HHS4 | UniProt:A0A078HHS4 | EnsemblPlants:CDY37935 |
| ProteinID:CDY37935 | ProteinID:CDY37935.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | EnsemblPlantsGene:GSBRNA2T00064949001 |
| InterPro:Hud_Sxl_RNA | InterPro:IPR000504 | InterPro:IPR002004 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:PABP-dom |
| InterPro:PABP_1234 | InterPro:PABP_HYD | PFAM:PF00076 | PFAM:PF00658 | PRINTS:PR00961 | PFscan:PS50102 |
| PFscan:PS51309 | PANTHER:PTHR24012 | PANTHER:PTHR24012:SF620 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk |
| SMART:SM00360 | SMART:SM00361 | SMART:SM00517 | SUPFAM:SSF54928 | SUPFAM:SSF63570 | TIGRFAMs:TIGR01628 |
| UniParc:UPI0004EB6D08 | SEG:seg | : | : | : | : |
Description
BnaC02g20760DPolyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A078HHS4]
Coordinates
chrLK032412:+:95668..98200
Molecular Weight (calculated)
71598.9 Da
IEP (calculated)
9.568
GRAVY (calculated)
-0.470
Length
651 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAASGTAPT TAMVDQAPNQ PAVPTVTQVA AAAAPAVEAL QTHPNSSLYV GDLDKSVNEA HLLDLFNQVA PVQTVRVCRD LTHRSLGYAY VNFANPNDAM
101: RAMDTLNYTP IKDRPIRIMR SNRDPSTRLS GKGNVFIKNL DVSIDNKDLY DTFSTFGTIL SCKVEMTLSG RSRGYGFVQF EKEETAQAAI EKLNGMLLND
201: KKVFVGLFVR RQDRTRSENR ALPRFTNVYV KNLPKEIDDG ELKKTFGKYG DISSAVVMKD ESGSSKCFGF VNYEKSEDAA VAVEKMNGIS LGENVLFVGK
301: AQKKSEREEE LKRKHEQEKL QGSNLYVKNL DDSVDDEKLK EMFSEYGNVT SSKVMINSGG LSRGFGFVAY SIPEEASKAM NEMNGKMIGM KPLYVALAQR
401: KEERRNHLQT KFSNMRTNGT MTPIPMPGFH HHPAGGAMAG PPHHQMYRGQ NGQGLMPSQP MGYGYQLQFM PRPRSGPANF VMPYPLHRQN QHGPRVGFRR
501: GTTNMQQQQH FQQQQQNTSS GMRYLGGAGN MRGMEVAVPQ GMISLPLGAS AISQNASQAL QEPSPLPISK LTSALALASP AKHPQMLGEQ LFPLVEKQEP
601: VHTAKVTGML LEMDQAEILH LLEAPEALKT KVSEALIALR LSANPPAVSS A
101: RAMDTLNYTP IKDRPIRIMR SNRDPSTRLS GKGNVFIKNL DVSIDNKDLY DTFSTFGTIL SCKVEMTLSG RSRGYGFVQF EKEETAQAAI EKLNGMLLND
201: KKVFVGLFVR RQDRTRSENR ALPRFTNVYV KNLPKEIDDG ELKKTFGKYG DISSAVVMKD ESGSSKCFGF VNYEKSEDAA VAVEKMNGIS LGENVLFVGK
301: AQKKSEREEE LKRKHEQEKL QGSNLYVKNL DDSVDDEKLK EMFSEYGNVT SSKVMINSGG LSRGFGFVAY SIPEEASKAM NEMNGKMIGM KPLYVALAQR
401: KEERRNHLQT KFSNMRTNGT MTPIPMPGFH HHPAGGAMAG PPHHQMYRGQ NGQGLMPSQP MGYGYQLQFM PRPRSGPANF VMPYPLHRQN QHGPRVGFRR
501: GTTNMQQQQH FQQQQQNTSS GMRYLGGAGN MRGMEVAVPQ GMISLPLGAS AISQNASQAL QEPSPLPISK LTSALALASP AKHPQMLGEQ LFPLVEKQEP
601: VHTAKVTGML LEMDQAEILH LLEAPEALKT KVSEALIALR LSANPPAVSS A
001: MAAAVASGIA PTTAMVDQVI PNQPTVAAAA PPPFPAVSQV AAVAAAAAAA EALQTHPNSS LYVGDLDPSV NESHLLDLFN QVAPVHNLRV CRDLTHRSLG
101: YAYVNFANPE DASRAMESLN YAPIRDRPIR IMLSNRDPST RLSGKGNVFI KNLDASIDNK ALYETFSSFG TILSCKVAMD VVGRSKGYGF VQFEKEETAQ
201: AAIDKLNGML LNDKQVFVGH FVRRQDRARS ESGAVPSFTN VYVKNLPKEI TDDELKKTFG KYGDISSAVV MKDQSGNSRS FGFVNFVSPE AAAVAVEKMN
301: GISLGEDVLY VGRAQKKSDR EEELRRKFEQ ERISRFEKLQ GSNLYLKNLD DSVNDEKLKE MFSEYGNVTS CKVMMNSQGL SRGFGFVAYS NPEEALLAMK
401: EMNGKMIGRK PLYVALAQRK EERQAHLQSL FTQIRSPGTM SPVPSPMSGF HHHPPGGPMS GPHHPMFIGH NGQGLVPSQP MGYGYQVQFM PGMRPGAGPP
501: NFMMPFPLQR QTQPGPRVGF RRGANNMQQQ FQQQQMLQQN ASRFMGGAGN RRNGMEASAP QGIIPLPLNA SANSHNAPQR SHKPTPLTIS KLASDLALAS
601: PDKHPRMLGD HLYPLVEQQE PANAAKVTGM LLEMDQAEIL HLLESPEALK AKVSEALDVL RRSADPAAVS SVDDQFALSS SE
101: YAYVNFANPE DASRAMESLN YAPIRDRPIR IMLSNRDPST RLSGKGNVFI KNLDASIDNK ALYETFSSFG TILSCKVAMD VVGRSKGYGF VQFEKEETAQ
201: AAIDKLNGML LNDKQVFVGH FVRRQDRARS ESGAVPSFTN VYVKNLPKEI TDDELKKTFG KYGDISSAVV MKDQSGNSRS FGFVNFVSPE AAAVAVEKMN
301: GISLGEDVLY VGRAQKKSDR EEELRRKFEQ ERISRFEKLQ GSNLYLKNLD DSVNDEKLKE MFSEYGNVTS CKVMMNSQGL SRGFGFVAYS NPEEALLAMK
401: EMNGKMIGRK PLYVALAQRK EERQAHLQSL FTQIRSPGTM SPVPSPMSGF HHHPPGGPMS GPHHPMFIGH NGQGLVPSQP MGYGYQVQFM PGMRPGAGPP
501: NFMMPFPLQR QTQPGPRVGF RRGANNMQQQ FQQQQMLQQN ASRFMGGAGN RRNGMEASAP QGIIPLPLNA SANSHNAPQR SHKPTPLTIS KLASDLALAS
601: PDKHPRMLGD HLYPLVEQQE PANAAKVTGM LLEMDQAEIL HLLESPEALK AKVSEALDVL RRSADPAAVS SVDDQFALSS SE
Arabidopsis Description
PAB5Polyadenylate-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q05196]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.