Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02486 | Canola | nucleus | 99.52 | 99.29 |
| Bra030908.1-P | Field mustard | nucleus | 99.28 | 99.28 |
| CDY51403 | Canola | nucleus | 95.94 | 95.71 |
| CDY33092 | Canola | nucleus | 95.7 | 94.35 |
| AT1G54080.2 | Thale cress | nucleus | 89.02 | 86.74 |
| PGSC0003DMT400012431 | Potato | mitochondrion, nucleus | 77.57 | 77.94 |
| Solyc06g063000.2.1 | Tomato | nucleus | 76.85 | 77.22 |
| CDY63384 | Canola | mitochondrion, nucleus | 76.85 | 77.03 |
| PGSC0003DMT400058919 | Potato | nucleus | 74.22 | 74.58 |
| Solyc03g122180.2.1 | Tomato | nucleus | 73.99 | 74.34 |
| GSMUA_Achr6P11660_001 | Banana | mitochondrion | 71.6 | 70.92 |
| GSMUA_Achr10P... | Banana | mitochondrion | 70.88 | 69.88 |
| GSMUA_Achr3P02150_001 | Banana | mitochondrion, nucleus | 71.84 | 69.35 |
| TraesCS4B01G148600.1 | Wheat | nucleus | 70.17 | 66.07 |
| GSMUA_Achr11P... | Banana | nucleus | 69.45 | 65.54 |
| Os11t0620100-01 | Rice | nucleus | 68.74 | 65.31 |
| Os07t0615400-01 | Rice | nucleus | 66.35 | 65.11 |
| Zm00001d026528_P001 | Maize | plastid | 33.89 | 64.55 |
| TraesCS4D01G150600.2 | Wheat | nucleus | 68.97 | 64.37 |
| TraesCS4A01G150000.1 | Wheat | mitochondrion | 68.5 | 64.06 |
| Zm00001d048824_P004 | Maize | nucleus | 68.02 | 63.76 |
| EES08860 | Sorghum | nucleus | 66.83 | 63.49 |
| TraesCS2D01G176700.1 | Wheat | nucleus | 64.44 | 63.38 |
| TraesCS2B01G195400.1 | Wheat | nucleus | 64.68 | 63.17 |
| TraesCS2A01G169100.1 | Wheat | nucleus | 64.2 | 62.85 |
| HORVU4Hr1G033990.7 | Barley | golgi, nucleus | 65.16 | 62.19 |
| GSMUA_Achr2P21780_001 | Banana | nucleus, plastid | 71.12 | 60.08 |
| CDX81822 | Canola | mitochondrion, nucleus | 76.61 | 58.9 |
| HORVU2Hr1G031260.2 | Barley | nucleus, plastid | 64.2 | 54.12 |
| VIT_04s0043g01000.t01 | Wine grape | cytosol, extracellular, mitochondrion | 18.62 | 53.42 |
| Zm00001d026522_P001 | Maize | nucleus | 29.36 | 50.41 |
| CDY34835 | Canola | nucleus | 25.3 | 26.97 |
| CDX82310 | Canola | nucleus | 26.25 | 26.7 |
| CDY17286 | Canola | nucleus | 25.54 | 26.42 |
| CDY22988 | Canola | nucleus | 26.25 | 26.19 |
| CDY19874 | Canola | nucleus | 26.01 | 26.01 |
| CDX89287 | Canola | nucleus | 25.54 | 25.85 |
| CDY29263 | Canola | nucleus | 25.78 | 25.78 |
| CDX99265 | Canola | nucleus | 25.78 | 25.47 |
| CDX95462 | Canola | nucleus | 26.25 | 25.35 |
| CDX92304 | Canola | nucleus | 25.54 | 25.24 |
| CDY18570 | Canola | nucleus | 26.01 | 25.12 |
| CDY68866 | Canola | nucleus | 24.82 | 25.06 |
| CDY28101 | Canola | nucleus | 25.54 | 24.94 |
| CDY50959 | Canola | nucleus | 25.54 | 24.88 |
| CDY29341 | Canola | nucleus | 24.82 | 24.82 |
| CDY16528 | Canola | nucleus | 25.06 | 24.76 |
| CDY14290 | Canola | nucleus | 24.58 | 24.7 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 25.06 | 24.65 |
| CDY46671 | Canola | nucleus | 25.06 | 24.48 |
| CDY32840 | Canola | nucleus | 24.34 | 24.23 |
| CDY66423 | Canola | nucleus | 24.58 | 24.18 |
| CDY06734 | Canola | mitochondrion | 17.18 | 23.61 |
| CDY13992 | Canola | nucleus | 22.91 | 22.91 |
| CDX95176 | Canola | nucleus | 22.67 | 22.67 |
| CDY52067 | Canola | nucleus | 22.67 | 22.67 |
| CDX92537 | Canola | nucleus | 22.43 | 22.43 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 22.43 | 21.86 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 22.2 | 21.63 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 25.78 | 21.3 |
| CDY67365 | Canola | plastid | 14.08 | 20.21 |
| CDY59539 | Canola | nucleus | 15.75 | 18.03 |
| CDY43894 | Canola | nucleus | 15.51 | 17.86 |
| CDY66740 | Canola | nucleus | 16.23 | 17.85 |
| CDY67617 | Canola | nucleus | 15.99 | 17.59 |
| CDY72408 | Canola | plastid | 3.82 | 17.2 |
| CDY54068 | Canola | cytosol | 25.06 | 16.08 |
| CDY51045 | Canola | cytosol | 25.06 | 16.08 |
| CDX69025 | Canola | nucleus, plastid | 23.39 | 16.04 |
| CDX75397 | Canola | nucleus, plastid | 23.39 | 15.91 |
| CDY62723 | Canola | cytosol | 23.39 | 15.88 |
| CDY51957 | Canola | cytosol, plastid | 23.39 | 15.83 |
| CDX89562 | Canola | nucleus | 23.63 | 15.35 |
| CDY38939 | Canola | nucleus | 23.39 | 15.22 |
| CDY46079 | Canola | nucleus | 22.67 | 15.1 |
| CDY57754 | Canola | nucleus | 7.64 | 15.02 |
| CDX71223 | Canola | cytosol | 22.67 | 14.89 |
| CDX89664 | Canola | cytosol | 21.72 | 14.82 |
| CDY67921 | Canola | nucleus | 22.43 | 14.57 |
| CDY56198 | Canola | cytosol | 16.95 | 14.52 |
| CDY30168 | Canola | cytosol | 17.66 | 13.75 |
| CDY36634 | Canola | nucleus | 21.24 | 13.71 |
| CDY41472 | Canola | cytosol, plastid | 20.53 | 13.42 |
| CDY36684 | Canola | plastid | 21.0 | 13.23 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 20.29 | 13.12 |
| CDY33264 | Canola | mitochondrion, nucleus | 6.21 | 13.0 |
| CDY03685 | Canola | nucleus | 19.33 | 12.6 |
| CDY37935 | Canola | nucleus | 19.57 | 12.6 |
| CDX72826 | Canola | plastid | 20.53 | 12.57 |
| CDX96344 | Canola | plastid | 20.53 | 12.57 |
| CDX79296 | Canola | plastid | 4.77 | 10.93 |
| CDY67364 | Canola | nucleus | 6.44 | 9.22 |
| CDX92325 | Canola | nucleus | 6.92 | 9.01 |
| CDY08990 | Canola | cytosol | 1.19 | 5.05 |
| CDX79295 | Canola | cytosol, plastid | 1.19 | 5.0 |
| CDY37229 | Canola | cytosol | 2.39 | 4.69 |
| CDX91689 | Canola | nucleus | 3.1 | 4.26 |
Protein Annotations
| MapMan:16.9.3 | Gene3D:3.30.70.330 | GO:A0A078J949 | UniProt:A0A078J949 | EnsemblPlants:CDY61476 | ProteinID:CDY61476 |
| ProteinID:CDY61476.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00033885001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44160 |
| PANTHER:PTHR44160:SF2 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EEFCB1 |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g78250DBnaC03g78250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J949]
Coordinates
chrLK034000:+:18608..21462
Molecular Weight (calculated)
46500.9 Da
IEP (calculated)
7.242
GRAVY (calculated)
-0.524
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MQNQRLKQQQ QQAMMQQAMM QQQHHSLYHP SLMAPPPPPQ MEPLPSGNLP PGFDPSTCRS VYAGNIHTQV TEVLLQEIFA STGPVESCKL IRKDKSSYGF
101: VHYFDRRSAG LAIMSLNGRH LFGQPIKVNW AYATGQREDT SSHFNIFVGD LSPEVTDAAL FESFSAFNTC SDARVMWDQK TGRSRGFGFV SFRNQQDAQT
201: AINEMNGKWI SSRQIRCNWA TKGATFGEEK HSSDGKSVVE LTNGSEDGRE ISISNEEAPE NNPQYTTVYV GNLAPEVTQL DLHRMFHTLG AGVIEEVRVQ
301: RDKGFGFVRY NTHDEAALAI QMGNSQPFLF SRPIKCSWGN KPTPTGTPSN PLPPPAPVPV PGLSPMDLLA YERQLALAKM HPQAQHSLRH VNAAGANAAM
401: YDGGFQNVAA AHQQLMYYQ
101: VHYFDRRSAG LAIMSLNGRH LFGQPIKVNW AYATGQREDT SSHFNIFVGD LSPEVTDAAL FESFSAFNTC SDARVMWDQK TGRSRGFGFV SFRNQQDAQT
201: AINEMNGKWI SSRQIRCNWA TKGATFGEEK HSSDGKSVVE LTNGSEDGRE ISISNEEAPE NNPQYTTVYV GNLAPEVTQL DLHRMFHTLG AGVIEEVRVQ
301: RDKGFGFVRY NTHDEAALAI QMGNSQPFLF SRPIKCSWGN KPTPTGTPSN PLPPPAPVPV PGLSPMDLLA YERQLALAKM HPQAQHSLRH VNAAGANAAM
401: YDGGFQNVAA AHQQLMYYQ
001: MQNQRLIKQQ QQQQQQQHQQ AMIQQAMMQQ HPSLYHPGVM APPQMEPLPS GNLPPGFDPT TCRSVYAGNI HTQVTEILLQ EIFASTGPIE SCKLIRKDKS
101: SYGFVHYFDR RCASMAIMTL NGRHIFGQPM KVNWAYATGQ REDTSSHFNI FVGDLSPEVT DAALFDSFSA FNSCSDARVM WDQKTGRSRG FGFVSFRNQQ
201: DAQTAINEMN GKWVSSRQIR CNWATKGATF GEDKHSSDGK SVVELTNGSS EDGRELSNED APENNPQFTT VYVGNLSPEV TQLDLHRLFY TLGAGVIEEV
301: RVQRDKGFGF VRYNTHDEAA LAIQMGNAQP FLFSRQIRCS WGNKPTPSGT ASNPLPPPAP ASVPSLSAMD LLAYERQLAL AKMHPQAQHS LRQAGLGVNV
401: AGGTAAMYDG GYQNVAAAHQ QLMYYQ
101: SYGFVHYFDR RCASMAIMTL NGRHIFGQPM KVNWAYATGQ REDTSSHFNI FVGDLSPEVT DAALFDSFSA FNSCSDARVM WDQKTGRSRG FGFVSFRNQQ
201: DAQTAINEMN GKWVSSRQIR CNWATKGATF GEDKHSSDGK SVVELTNGSS EDGRELSNED APENNPQFTT VYVGNLSPEV TQLDLHRLFY TLGAGVIEEV
301: RVQRDKGFGF VRYNTHDEAA LAIQMGNAQP FLFSRQIRCS WGNKPTPSGT ASNPLPPPAP ASVPSLSAMD LLAYERQLAL AKMHPQAQHS LRQAGLGVNV
401: AGGTAAMYDG GYQNVAAAHQ QLMYYQ
Arabidopsis Description
UBP1AOligouridylate-binding protein 1A [Source:UniProtKB/TrEMBL;Acc:F4HV67]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.