Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34110.1 | CDX79791 | AT2G43970.1 | 21798944 |
| AT4G34110.1 | CDY17896 | AT2G43970.1 | 21798944 |
| AT4G34110.1 | CDY01209 | AT4G14270.1 | 21798944 |
| AT4G34110.1 | CDY01210 | AT4G14270.1 | 21798944 |
| AT4G34110.1 | CDY12749 | AT4G14270.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51957 | Canola | cytosol, plastid | 99.19 | 98.87 |
| CDX79295 | Canola | cytosol, plastid | 15.4 | 95.0 |
| CDY08990 | Canola | cytosol | 14.91 | 92.93 |
| CDX69025 | Canola | nucleus, plastid | 89.3 | 90.18 |
| CDX75397 | Canola | nucleus, plastid | 89.3 | 89.45 |
| AT4G34110.1 | Thale cress | cytosol | 89.3 | 87.6 |
| CDX79296 | Canola | plastid | 24.96 | 84.15 |
| CDX71223 | Canola | cytosol | 82.01 | 79.31 |
| CDX89664 | Canola | cytosol | 78.77 | 79.15 |
| CDY67364 | Canola | nucleus | 37.12 | 78.16 |
| CDY36634 | Canola | nucleus | 80.23 | 76.27 |
| CDY67365 | Canola | plastid | 35.82 | 75.68 |
| KRH70673 | Soybean | nucleus | 74.72 | 71.14 |
| KRH50336 | Soybean | cytosol | 74.88 | 70.97 |
| CDY54068 | Canola | cytosol | 74.23 | 70.14 |
| CDY51045 | Canola | cytosol | 74.07 | 69.98 |
| PGSC0003DMT400066245 | Potato | extracellular | 72.77 | 69.83 |
| Solyc01g107870.2.1 | Tomato | extracellular | 72.77 | 69.83 |
| CDY37229 | Canola | cytosol | 23.82 | 69.01 |
| HORVU2Hr1G087390.3 | Barley | cytosol, mitochondrion, nucleus | 65.15 | 65.79 |
| GSMUA_Achr9P00990_001 | Banana | cytosol | 67.26 | 63.75 |
| TraesCS2D01G358000.1 | Wheat | cytosol | 68.56 | 63.7 |
| TraesCS2A01G359000.1 | Wheat | cytosol | 68.56 | 63.61 |
| TraesCS2B01G378400.1 | Wheat | nucleus | 68.4 | 63.46 |
| GSMUA_Achr4P09890_001 | Banana | cytosol | 66.45 | 62.88 |
| Zm00001d003106_P003 | Maize | extracellular, mitochondrion, plasma membrane | 66.29 | 62.73 |
| GSMUA_AchrUn_... | Banana | cytosol | 66.13 | 62.58 |
| Os04t0504800-01 | Rice | plasma membrane | 66.45 | 62.22 |
| Zm00001d025801_P005 | Maize | cytosol, plastid | 65.64 | 62.12 |
| Os08t0314800-02 | Rice | cytosol, nucleus, plasma membrane | 66.13 | 61.82 |
| EES12460 | Sorghum | plastid | 66.45 | 61.75 |
| Os09t0115400-01 | Rice | nucleus | 66.13 | 61.63 |
| TraesCS5B01G159400.1 | Wheat | cytosol | 64.51 | 61.14 |
| CDX89562 | Canola | nucleus | 63.86 | 61.09 |
| TraesCS5A01G161800.2 | Wheat | nucleus | 64.34 | 60.98 |
| TraesCS5D01G167000.1 | Wheat | nucleus, unclear | 64.34 | 60.98 |
| KXG35258 | Sorghum | cytosol | 64.83 | 60.98 |
| Zm00001d019824_P004 | Maize | cytosol | 64.83 | 60.98 |
| TraesCS7D01G287900.1 | Wheat | cytosol | 63.05 | 60.97 |
| GSMUA_Achr4P20270_001 | Banana | cytosol | 63.21 | 60.65 |
| CDY38939 | Canola | nucleus | 63.21 | 60.56 |
| Zm00001d005276_P007 | Maize | cytosol | 64.18 | 60.55 |
| CDY46079 | Canola | nucleus | 61.26 | 60.1 |
| TraesCS7A01G288700.1 | Wheat | nucleus | 63.86 | 59.52 |
| CDY67921 | Canola | nucleus | 61.75 | 59.07 |
| HORVU5Hr1G050560.1 | Barley | plastid | 64.51 | 56.7 |
| VIT_03s0063g00070.t01 | Wine grape | cytosol, plastid | 71.96 | 56.42 |
| HORVU7Hr1G063970.1 | Barley | cytosol, nucleus, plastid | 64.02 | 55.17 |
| TraesCS7B01G182800.3 | Wheat | cytosol | 59.32 | 54.22 |
| GSMUA_Achr8P24250_001 | Banana | cytosol, plastid | 53.65 | 51.08 |
| CDY72408 | Canola | plastid | 7.62 | 50.54 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 49.92 | 47.53 |
| CDY37935 | Canola | nucleus | 49.92 | 47.31 |
| CDY41472 | Canola | cytosol, plastid | 49.11 | 47.27 |
| CDY03685 | Canola | nucleus | 48.78 | 46.81 |
| CDX72826 | Canola | plastid | 51.7 | 46.64 |
| CDX96344 | Canola | plastid | 51.7 | 46.64 |
| CDY36684 | Canola | plastid | 50.08 | 46.47 |
| GSMUA_Achr7P05430_001 | Banana | nucleus | 65.96 | 45.02 |
| CDX92325 | Canola | nucleus | 23.01 | 44.1 |
| CDY57754 | Canola | nucleus | 14.1 | 40.85 |
| CDY33264 | Canola | mitochondrion, nucleus | 13.13 | 40.5 |
| CDY30168 | Canola | cytosol | 30.79 | 35.32 |
| CDY56198 | Canola | cytosol | 27.07 | 34.15 |
| CDX91689 | Canola | nucleus | 16.69 | 33.77 |
| CDY59539 | Canola | nucleus | 16.37 | 27.6 |
| CDY66740 | Canola | nucleus | 16.86 | 27.3 |
| CDY67617 | Canola | nucleus | 16.86 | 27.3 |
| CDY43894 | Canola | nucleus | 16.05 | 27.2 |
| CDY06734 | Canola | mitochondrion | 13.29 | 26.89 |
| CDY13992 | Canola | nucleus | 17.67 | 26.01 |
| CDX92537 | Canola | nucleus | 17.5 | 25.78 |
| CDY34835 | Canola | nucleus | 16.05 | 25.19 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 17.5 | 25.12 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 17.5 | 25.12 |
| CDY17286 | Canola | nucleus | 16.05 | 24.44 |
| CDX89287 | Canola | nucleus | 16.05 | 23.91 |
| CDY19874 | Canola | nucleus | 16.05 | 23.63 |
| CDY29263 | Canola | nucleus | 15.88 | 23.39 |
| CDY61476 | Canola | nucleus | 15.88 | 23.39 |
| CDY02486 | Canola | nucleus | 15.88 | 23.33 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 16.05 | 23.24 |
| CDX95176 | Canola | nucleus | 15.72 | 23.15 |
| CDY46671 | Canola | nucleus | 16.05 | 23.08 |
| CDY14290 | Canola | nucleus | 15.56 | 23.02 |
| CDY63384 | Canola | mitochondrion, nucleus | 15.56 | 22.97 |
| CDY51403 | Canola | nucleus | 15.56 | 22.86 |
| CDY33092 | Canola | nucleus | 15.72 | 22.82 |
| CDY52067 | Canola | nucleus | 15.4 | 22.67 |
| CDY68866 | Canola | nucleus | 15.07 | 22.41 |
| CDY66423 | Canola | nucleus | 15.23 | 22.07 |
| CDY29341 | Canola | nucleus | 14.75 | 21.72 |
| CDY16528 | Canola | nucleus | 14.91 | 21.7 |
| CDY22988 | Canola | nucleus | 14.75 | 21.67 |
| CDY32840 | Canola | nucleus | 14.75 | 21.62 |
| CDX95462 | Canola | nucleus | 15.07 | 21.43 |
| CDY18570 | Canola | nucleus | 15.07 | 21.43 |
| CDY50959 | Canola | nucleus | 14.91 | 21.4 |
| CDX82310 | Canola | nucleus | 14.26 | 21.36 |
| CDX99265 | Canola | nucleus | 14.59 | 21.23 |
| CDY28101 | Canola | nucleus | 14.75 | 21.21 |
| CDX92304 | Canola | nucleus | 14.42 | 20.99 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 16.21 | 19.72 |
| CDX81822 | Canola | mitochondrion, nucleus | 15.88 | 17.98 |
Protein Annotations
| Gene3D:1.10.1900.10 | MapMan:17.4.2.5 | Gene3D:3.30.70.330 | GO:A0A078JAW3 | UniProt:A0A078JAW3 | EnsemblPlants:CDY62723 |
| ProteinID:CDY62723 | ProteinID:CDY62723.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | EnsemblPlantsGene:GSBRNA2T00037528001 |
| InterPro:IPR000504 | InterPro:IPR002004 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:PABP-dom | InterPro:PABP_1234 |
| InterPro:PABP_HYD | PFAM:PF00076 | PFAM:PF00658 | PFscan:PS50102 | PFscan:PS51309 | PANTHER:PTHR24012 |
| PANTHER:PTHR24012:SF349 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00360 | SMART:SM00361 |
| SMART:SM00517 | SUPFAM:SSF54928 | SUPFAM:SSF63570 | TIGRFAMs:TIGR01628 | UniParc:UPI0004EDF8FB | SEG:seg |
Description
BnaC03g77220DPolyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A078JAW3]
Coordinates
chrLK034182:-:14971..19235
Molecular Weight (calculated)
67447.3 Da
IEP (calculated)
8.358
GRAVY (calculated)
-0.501
Length
617 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQVQTANGT SAAAPAQIGT TSLYVGDLDL NVTDSQLFEA FSQMGQVVSV RVCRDLATRK SLGYGYVNLA NPQDAARAIQ EMNFMPLYGK PIRVMYSHRD
101: PSVRRSGAGN IFIKNLDLAI DHKALHDTFS TFGNIVSCKV AVDASGQSKG YGFVQYADEE SAQKAIEKLN GMLLNDKQVY VGPFLRRQER DSSANKTKFT
201: NVYVKNLGES TTDDDLKKAF SEYGKITSAV VMKDGEGKSK GFGFVNFENA DDAARAVEAL NGHKFDDKEW YVGRAQKKSE RETELRVRYE QNLKEAAEKF
301: QSSNLYVKNL DPSISDEKLK EIFSPFGTVT SCKVMRDPSG ISKGSGFVAF STPEEATEAM SQLSGKMVES KPLYVAIAQK KEDRRVRLQA QFSQPRPVAM
401: PPSAGPRMPM FPPGGPGIGQ QMFYGQAPPT MIPPQPGYGY QQQLVPGMRP GGGHGPNYFM PMVQPHQQRP GVGGRRPGGI QQFQQQPPMM QHQMHPRGRN
501: IRYSQGRGVS GGDVPPYDMG NNNMPLPIGT LASNLANASP EQQRTMLGEN LYPLVEKLEA ESAAKVTGML LEMDQTEVLH LLESPEALEA KVAEAMDVLR
601: SVAAGGAAEQ LASLNLS
101: PSVRRSGAGN IFIKNLDLAI DHKALHDTFS TFGNIVSCKV AVDASGQSKG YGFVQYADEE SAQKAIEKLN GMLLNDKQVY VGPFLRRQER DSSANKTKFT
201: NVYVKNLGES TTDDDLKKAF SEYGKITSAV VMKDGEGKSK GFGFVNFENA DDAARAVEAL NGHKFDDKEW YVGRAQKKSE RETELRVRYE QNLKEAAEKF
301: QSSNLYVKNL DPSISDEKLK EIFSPFGTVT SCKVMRDPSG ISKGSGFVAF STPEEATEAM SQLSGKMVES KPLYVAIAQK KEDRRVRLQA QFSQPRPVAM
401: PPSAGPRMPM FPPGGPGIGQ QMFYGQAPPT MIPPQPGYGY QQQLVPGMRP GGGHGPNYFM PMVQPHQQRP GVGGRRPGGI QQFQQQPPMM QHQMHPRGRN
501: IRYSQGRGVS GGDVPPYDMG NNNMPLPIGT LASNLANASP EQQRTMLGEN LYPLVEKLEA ESAAKVTGML LEMDQTEVLH LLESPEALEA KVAEAMDVLR
601: SVAAGGAAEQ LASLNLS
001: MAQVQLQGQT PNGSTAAVTS APATSGGATA TQFGNTSLYV GDLDFNVTDS QLFDAFGQMG TVVTVRVCRD LVTRRSLGYG YVNFTNPQDA ARAIQELNYI
101: PLYGKPIRVM YSHRDPSVRR SGAGNIFIKN LDESIDHKAL HDTFSSFGNI VSCKVAVDSS GQSKGYGFVQ YANEESAQKA IEKLNGMLLN DKQVYVGPFL
201: RRQERDSTAN KTKFTNVYVK NLAESTTDDD LKNAFGEYGK ITSAVVMKDG EGKSKGFGFV NFENADDAAR AVESLNGHKF DDKEWYVGRA QKKSERETEL
301: RVRYEQNLKE AADKFQSSNL YVKNLDPSIS DEKLKEIFSP FGTVTSSKVM RDPNGTSKGS GFVAFATPEE ATEAMSQLSG KMIESKPLYV AIAQRKEDRR
401: VRLQAQFSQV RPVAMQPSVG PRMPVYPPGG PGIGQQMFYG QAPPAMIPPQ PGYGYQQQLV PGMRPGGGPV PSFFMPMVQP QQQRPGGGRR PGGIQHSQQQ
501: NPMMQQQMHP RGRMFRYPQG RGGSGDVPPY DMGNNMPLTI GALASNLSNA TPEQQRTMLG EVLYPLVEQV EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAT EQLASLNLS
101: PLYGKPIRVM YSHRDPSVRR SGAGNIFIKN LDESIDHKAL HDTFSSFGNI VSCKVAVDSS GQSKGYGFVQ YANEESAQKA IEKLNGMLLN DKQVYVGPFL
201: RRQERDSTAN KTKFTNVYVK NLAESTTDDD LKNAFGEYGK ITSAVVMKDG EGKSKGFGFV NFENADDAAR AVESLNGHKF DDKEWYVGRA QKKSERETEL
301: RVRYEQNLKE AADKFQSSNL YVKNLDPSIS DEKLKEIFSP FGTVTSSKVM RDPNGTSKGS GFVAFATPEE ATEAMSQLSG KMIESKPLYV AIAQRKEDRR
401: VRLQAQFSQV RPVAMQPSVG PRMPVYPPGG PGIGQQMFYG QAPPAMIPPQ PGYGYQQQLV PGMRPGGGPV PSFFMPMVQP QQQRPGGGRR PGGIQHSQQQ
501: NPMMQQQMHP RGRMFRYPQG RGGSGDVPPY DMGNNMPLTI GALASNLSNA TPEQQRTMLG EVLYPLVEQV EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAT EQLASLNLS
Arabidopsis Description
PAB2Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A178UWB3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.