Factsheet for GSMUA_Achr7P05430_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P11420_001
GSMUA_Achr3P19230_001
GSMUA_Achr6P18240_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34110.1	GSMUA_Achr2P11420_001	AT2G43970.1	21798944
AT4G34110.1	GSMUA_Achr3P19230_001	AT2G43970.1	21798944
AT4G34110.1	GSMUA_Achr6P18240_001	AT2G43970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P20270_001	Banana	cytosol	60.84	85.54
GSMUA_Achr9P00990_001	Banana	cytosol	53.76	74.65
VIT_18s0001g10170.t01	Wine grape	cytosol	52.65	74.38
KRH70673	Soybean	nucleus	51.88	72.38
GSMUA_Achr4P09890_001	Banana	cytosol	52.1	72.24
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	52.65	72.12
KRH50336	Soybean	cytosol	51.88	72.04
VIT_07s0031g00210.t01	Wine grape	cytosol	51.88	71.71
TraesCS7D01G287900.1	Wheat	cytosol	50.55	71.63
KRH15385	Soybean	nucleus	51.44	71.32
Os09t0115400-01	Rice	nucleus	52.1	71.15
GSMUA_AchrUn_...	Banana	cytosol	51.22	71.01
TraesCS5B01G159400.1	Wheat	cytosol	51.0	70.81
TraesCS5D01G167000.1	Wheat	nucleus, unclear	50.88	70.66
TraesCS5A01G161800.2	Wheat	nucleus	50.88	70.66
KRH05656	Soybean	endoplasmic reticulum, nucleus	51.11	70.64
TraesCS7A01G288700.1	Wheat	nucleus	51.0	69.64
KXG35258	Sorghum	cytosol	49.67	68.45
Zm00001d005276_P007	Maize	cytosol	49.23	68.04
KRH52023	Soybean	cytosol, endoplasmic reticulum	47.12	67.62
Zm00001d019824_P004	Maize	cytosol	48.67	67.07
Bra013104.1-P	Field mustard	cytosol	45.69	67.05
CDX89664	Canola	cytosol	45.46	66.94
CDY67364	Canola	nucleus	21.57	66.55
KRH61326	Soybean	cytosol, endoplasmic reticulum	46.35	66.51
AT4G34110.1	Thale cress	cytosol	46.24	66.45
CDX69025	Canola	nucleus, plastid	44.91	66.45
CDX75397	Canola	nucleus, plastid	45.13	66.23
Bra011488.1-P	Field mustard	cytosol, plastid	44.91	66.23
CDY54068	Canola	cytosol	47.68	66.0
CDY62723	Canola	cytosol	45.02	65.96
Bra018797.1-P	Field mustard	cytosol	47.57	65.85
CDY51045	Canola	cytosol	47.57	65.85
Bra034603.1-P	Field mustard	cytosol, plastid	45.02	65.75
CDX71223	Canola	cytosol	46.35	65.67
CDY51957	Canola	cytosol, plastid	44.91	65.59
HORVU5Hr1G050560.1	Barley	plastid	50.66	65.24
CDY67365	Canola	plastid	21.02	65.07
TraesCS7B01G182800.3	Wheat	cytosol	48.34	64.74
AT1G49760.1	Thale cress	cytosol	47.9	64.53
CDY36634	Canola	nucleus	46.13	64.25
HORVU7Hr1G063970.1	Barley	cytosol, nucleus, plastid	50.88	64.25
Bra015220.1-P	Field mustard	cytosol	40.15	62.8
CDX79296	Canola	plastid	12.28	60.66
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	51.11	58.7
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	41.81	58.33
PGSC0003DMT400012508	Potato	nucleus	7.74	56.45
GSMUA_Achr5P24940_001	Banana	plastid	38.05	51.65
Bra022413.1-P	Field mustard	cytosol	22.23	45.07
CDX92325	Canola	nucleus	14.93	41.93
GSMUA_Achr4P00840_001	Banana	cytosol	20.69	38.64
GSMUA_Achr9P10860_001	Banana	cytosol	28.21	35.66
CDX91689	Canola	nucleus	11.5	34.1
GSMUA_Achr5P20140_001	Banana	nucleus	11.62	28.69
GSMUA_Achr6P10190_001	Banana	nucleus	9.85	28.43
GSMUA_Achr10P...	Banana	nucleus	9.51	27.39
GSMUA_Achr9P15210_001	Banana	nucleus	9.18	26.6
GSMUA_Achr6P29410_001	Banana	nucleus	9.62	26.52
GSMUA_Achr9P24980_001	Banana	cytosol	9.51	25.98
GSMUA_Achr3P06840_001	Banana	nucleus	8.96	25.96
GSMUA_Achr8P03580_001	Banana	cytosol, mitochondrion, nucleus	10.84	24.08
GSMUA_Achr9P14120_001	Banana	nucleus	10.4	23.15
GSMUA_Achr8P31320_001	Banana	nucleus	10.18	23.0
GSMUA_Achr10P...	Banana	nucleus	10.95	22.81
GSMUA_Achr6P11660_001	Banana	mitochondrion	10.62	22.7
GSMUA_Achr3P01720_001	Banana	mitochondrion	9.96	22.33
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	10.29	21.43
GSMUA_Achr11P...	Banana	nucleus	10.51	21.4
GSMUA_Achr10P...	Banana	mitochondrion	9.96	21.18
Solyc06g062680.1.1	Tomato	cytosol	11.5	19.59
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	10.18	18.55
GSMUA_Achr6P09470_001	Banana	nucleus	2.99	18.37

Protein Annotations

Gene3D:1.10.1900.10	Gene3D:1.10.472.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	ncoils:Coil	InterPro:Cyclin_C-dom
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSMUA_Achr7G05430_001	EnsemblPlants:GSMUA_Achr7P05430_001	EnsemblPlants:GSMUA_Achr7T05430_001	InterPro:IPR000504
InterPro:IPR002004	InterPro:IPR012677	UniProt:M0TEY3	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_1234
InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	PFAM:PF02984	PFscan:PS50102	PFscan:PS51309
PANTHER:PTHR24012	PANTHER:PTHR24012:SF349	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360
SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI000296E0F4
SEG:seg	:	:	:	:	:

Description

Polyadenylate-binding protein 2 [Source:GMGC_GENE;Acc:GSMUA_Achr7G05430_001]

Coordinates

chr7:+:4021592..4031138

Molecular Weight (calculated)

98494.4 Da

IEP (calculated)

7.974

GRAVY (calculated)

-0.344

Length

904 amino acids

Sequence
(BLAST)

001: MAQIQLQPQA VSGPAAGGGG VQFPSTSLYV GDLDSGVTDA QLYDIFSQIG QVVSVRVCRD INTRRSLGYA YVNYNDPADA ARAIEVLNFT PLNGKTIRIM
101: ISNRDPSTRR SGTANIFIKN LDKSIDNKAL YDTFSAFGNI LSCKVATDAS GASKGYGFVQ FEQEEAAQNA IEKLNGMLLN DKKVFVGPFV RKQERENAAG
201: NTKFNNVFVK NLSESMTEDT LQEVFGEFGI ITSCIVMREG DGKSKCFGFV NFENPDDAAQ AVQELDGKKF DDKEWYVGKA QKKSEREQEL KERFEQSKQE
301: ATEKSQGVNL YLKNLDDSIG DDNLRELFSG FGAIASCKIM RDKNGASKGS GFVAFQSPED ASRALSEMNG KMIGNKPLYV APAQRKEDRR ARLQAQFSQM
401: RPVAMPPSVA PRVPLYPPGG PGLGQPLFYG QPPALVPPQP AFGFQQPLVP GMRPGPFPNF YMQMAQQGQQ QVQRPGSRRA GGGGPVQQTQ QHPMQMIQQQ
501: MLPRGGRPYR YPPGRGMPEV PVSGIHGGMF SLPYDMGGGM PQPTVPIGEL TSALANATLE QQRTMLGESL YPLVDQLEHD YSAKVTGMLL EMDQTEVLHL
601: LESPEALKAK VAEAMEVLRS VAQQHHQVVS PTDRLAALTL NDVEDEGEFV FESKTIRRME LLVLSALGWR MNPVTPLSFI HHVLPRLFSK AENADSPATA
701: IAVRIQTVVR RCEAVLLSVI AGRRWVQYPA SVWASAALLR ATVPVDGDVA AVDSQGIHHL VALLNAPKEK VEECYQLLVE SVRAGVVGHK RKHSSSASCY
801: CSSPRSPSGV IGSCFSCESP CDSWAAWPPS SPPSSPGAAP PFKRPSGNTT TKSFVVDGVE TASPCVPSAY SSAVLTRERW VEGERGRTLG VGFRPTRSTT
901: RSLL

Best Arabidopsis Sequence Match ( AT4G34110.1 )
(BLAST)

001: MAQVQLQGQT PNGSTAAVTS APATSGGATA TQFGNTSLYV GDLDFNVTDS QLFDAFGQMG TVVTVRVCRD LVTRRSLGYG YVNFTNPQDA ARAIQELNYI
101: PLYGKPIRVM YSHRDPSVRR SGAGNIFIKN LDESIDHKAL HDTFSSFGNI VSCKVAVDSS GQSKGYGFVQ YANEESAQKA IEKLNGMLLN DKQVYVGPFL
201: RRQERDSTAN KTKFTNVYVK NLAESTTDDD LKNAFGEYGK ITSAVVMKDG EGKSKGFGFV NFENADDAAR AVESLNGHKF DDKEWYVGRA QKKSERETEL
301: RVRYEQNLKE AADKFQSSNL YVKNLDPSIS DEKLKEIFSP FGTVTSSKVM RDPNGTSKGS GFVAFATPEE ATEAMSQLSG KMIESKPLYV AIAQRKEDRR
401: VRLQAQFSQV RPVAMQPSVG PRMPVYPPGG PGIGQQMFYG QAPPAMIPPQ PGYGYQQQLV PGMRPGGGPV PSFFMPMVQP QQQRPGGGRR PGGIQHSQQQ
501: NPMMQQQMHP RGRMFRYPQG RGGSGDVPPY DMGNNMPLTI GALASNLSNA TPEQQRTMLG EVLYPLVEQV EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAT EQLASLNLS

Arabidopsis Description

PAB2Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A178UWB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.