Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 3
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P10190_001 | Banana | nucleus | 55.78 | 26.2 |
| GSMUA_Achr3P01720_001 | Banana | mitochondrion | 69.39 | 25.31 |
| GSMUA_Achr10P... | Banana | nucleus | 49.66 | 23.25 |
| TraesCS6A01G204400.1 | Wheat | mitochondrion | 58.5 | 22.69 |
| GSMUA_Achr9P15210_001 | Banana | nucleus | 46.26 | 21.79 |
| Os04t0449900-01 | Rice | plastid | 56.46 | 21.45 |
| EES10898 | Sorghum | nucleus | 61.22 | 21.28 |
| HORVU6Hr1G048390.1 | Barley | cytoskeleton, nucleus, peroxisome | 59.86 | 21.1 |
| TraesCS2B01G335700.1 | Wheat | plastid | 59.86 | 20.95 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 59.18 | 20.86 |
| TraesCS2D01G315400.2 | Wheat | plastid | 59.86 | 20.75 |
| TraesCS2A01G317700.2 | Wheat | plastid | 59.86 | 20.75 |
| VIT_18s0001g11080.t01 | Wine grape | nucleus | 57.82 | 20.33 |
| PGSC0003DMT400020621 | Potato | nucleus | 54.42 | 20.2 |
| GSMUA_Achr3P06840_001 | Banana | nucleus | 42.86 | 20.19 |
| KRH05723 | Soybean | nucleus | 56.46 | 20.1 |
| KRH51956 | Soybean | nucleus | 55.78 | 19.95 |
| EES05289 | Sorghum | plastid | 58.5 | 19.77 |
| KRH15315 | Soybean | nucleus | 57.14 | 19.76 |
| KRH50251 | Soybean | nucleus | 57.82 | 19.72 |
| Zm00001d025551_P002 | Maize | plastid | 60.54 | 19.69 |
| Bra040663.1-P | Field mustard | nucleus | 49.66 | 19.62 |
| VIT_03s0063g00850.t01 | Wine grape | nucleus | 55.1 | 19.57 |
| KRH61258 | Soybean | nucleus | 54.42 | 19.56 |
| KRH71168 | Soybean | nucleus | 57.14 | 19.49 |
| TraesCS6B01G228100.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 59.86 | 19.3 |
| Zm00001d050838_P001 | Maize | plastid | 55.78 | 19.07 |
| Bra018813.1-P | Field mustard | mitochondrion, nucleus | 50.34 | 18.97 |
| HORVU2Hr1G078910.4 | Barley | mitochondrion, nucleus | 55.1 | 18.97 |
| CDY32840 | Canola | nucleus | 53.74 | 18.76 |
| CDY16528 | Canola | nucleus | 53.74 | 18.63 |
| Solyc04g079310.2.1 | Tomato | nucleus | 57.14 | 18.63 |
| AT1G47500.1 | Thale cress | nucleus | 53.74 | 18.2 |
| GSMUA_Achr10P... | Banana | nucleus | 53.74 | 18.2 |
| CDX95176 | Canola | nucleus | 51.7 | 18.14 |
| CDY52067 | Canola | nucleus | 51.7 | 18.14 |
| Bra027446.1-P | Field mustard | cytosol | 39.46 | 18.12 |
| CDY28101 | Canola | nucleus | 52.38 | 17.95 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 57.82 | 17.93 |
| Solyc01g108500.2.1 | Tomato | nucleus | 50.34 | 17.92 |
| CDY50959 | Canola | nucleus | 52.38 | 17.91 |
| AT1G47490.1 | Thale cress | nucleus | 52.38 | 17.82 |
| PGSC0003DMT400066648 | Potato | nucleus | 50.34 | 17.62 |
| CDX99265 | Canola | nucleus | 50.34 | 17.45 |
| CDX92304 | Canola | nucleus | 50.34 | 17.45 |
| CDY29341 | Canola | nucleus | 49.66 | 17.42 |
| Bra022389.1-P | Field mustard | nucleus | 50.34 | 17.37 |
| Bra037538.1-P | Field mustard | nucleus | 47.62 | 17.37 |
| AT1G49600.3 | Thale cress | nucleus | 52.38 | 17.11 |
| Bra001735.1-P | Field mustard | nucleus | 47.62 | 16.99 |
| CDX82310 | Canola | nucleus | 47.62 | 16.99 |
| AT3G19130.1 | Thale cress | nucleus | 49.66 | 16.78 |
| GSMUA_Achr6P29410_001 | Banana | nucleus | 37.41 | 16.77 |
| CDY22988 | Canola | nucleus | 47.62 | 16.67 |
| CDY68866 | Canola | nucleus | 46.94 | 16.63 |
| Solyc10g050860.1.1 | Tomato | nucleus | 48.3 | 16.59 |
| GSMUA_Achr9P24980_001 | Banana | cytosol | 36.73 | 16.31 |
| GSMUA_Achr8P31320_001 | Banana | nucleus | 44.22 | 16.25 |
| GSMUA_Achr8P03580_001 | Banana | cytosol, mitochondrion, nucleus | 44.9 | 16.22 |
| CDX95462 | Canola | nucleus | 47.62 | 16.13 |
| CDY18570 | Canola | nucleus | 47.62 | 16.13 |
| CDY06734 | Canola | mitochondrion | 30.61 | 14.75 |
| Bra014216.1-P | Field mustard | nucleus | 53.74 | 13.81 |
| GSMUA_Achr5P20140_001 | Banana | nucleus | 23.13 | 9.29 |
| Os02t0567900-01 | Rice | cytosol, nucleus | 16.33 | 9.27 |
| GSMUA_Achr6P11660_001 | Banana | mitochondrion | 21.77 | 7.57 |
| GSMUA_Achr10P... | Banana | mitochondrion | 21.77 | 7.53 |
| GSMUA_Achr3P02150_001 | Banana | mitochondrion, nucleus | 21.77 | 7.37 |
| GSMUA_Achr11P... | Banana | nucleus | 21.77 | 7.21 |
| GSMUA_Achr9P14120_001 | Banana | nucleus | 19.05 | 6.9 |
| GSMUA_Achr4P00840_001 | Banana | cytosol | 21.77 | 6.61 |
| GSMUA_Achr2P21780_001 | Banana | nucleus, plastid | 21.77 | 6.45 |
| GSMUA_Achr9P00990_001 | Banana | cytosol | 21.77 | 4.92 |
| GSMUA_Achr4P20270_001 | Banana | cytosol | 19.05 | 4.35 |
| GSMUA_Achr9P10860_001 | Banana | cytosol | 20.41 | 4.2 |
| GSMUA_Achr4P09890_001 | Banana | cytosol | 17.69 | 3.99 |
| GSMUA_Achr5P24940_001 | Banana | plastid | 17.69 | 3.9 |
| GSMUA_AchrUn_... | Banana | cytosol | 17.01 | 3.83 |
| GSMUA_Achr7P05430_001 | Banana | nucleus | 18.37 | 2.99 |
| GSMUA_Achr8P24250_001 | Banana | cytosol, plastid | 10.88 | 2.47 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P09470_001 | EnsemblPlants:GSMUA_Achr6T09470_001 | EnsemblPlantsGene:GSMUA_Achr6G09470_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR43955 | PANTHER:PTHR43955:SF5 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000296742A | UniProt:M0T5J6 | MapMan:35.1 | : |
Description
Putative tRNA selenocysteine 1-associated protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G09470_001]
Coordinates
chr6:+:6415773..6417310
Molecular Weight (calculated)
16451.4 Da
IEP (calculated)
6.721
GRAVY (calculated)
-0.573
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MMAPPPPPPP YGHPFVPYPH PPTPPPQPPS KSNRHQQGEE AAAEDEKRTI WVGDLQYWMD ENYLLGCFVH AGEVVSIKVI RNKQTGQSEG YGFVEFHSHA
101: TAEKILQSFS GHLMPNTDLP FRLNWAPFSM GNKRSGLTFD HSIFVGA
101: TAEKILQSFS GHLMPNTDLP FRLNWAPFSM GNKRSGLTFD HSIFVGA
001: MAMMHPPQPP QGSYHHPQTL EEVRTLWIGD LQYWVDENYL TSCFSQTGEL VSVKVIRNKI TGQPEGYGFI EFISHAAAER TLQTYNGTQM PGTELTFRLN
101: WASFGSGQKV DAGPDHSIFV GDLAPDVTDY LLQETFRVHY SSVRGAKVVT DPSTGRSKGY GFVKFAEESE RNRAMAEMNG LYCSTRPMRI SAATPKKNVG
201: VQQQYVTKVT VPSAVAAPVQ AYVAPPESDV TCTTISVANL DQNVTEEELK KAFSQLGEVI YVKIPATKGY GYVQFKTRPS AEEAVQRMQG QVIGQQAVRI
301: SWSKNPGQDG WVTQADPNQW NGYYGYGQGY DAYAYGATQD PSVYAYGGYG YPQYPQQGEG TQDISNSAAG GVAGAEQELY DPLATPDVDK LNAAYLSVHA
401: SAILGRPMWQ RTSSLTSQLG K
101: WASFGSGQKV DAGPDHSIFV GDLAPDVTDY LLQETFRVHY SSVRGAKVVT DPSTGRSKGY GFVKFAEESE RNRAMAEMNG LYCSTRPMRI SAATPKKNVG
201: VQQQYVTKVT VPSAVAAPVQ AYVAPPESDV TCTTISVANL DQNVTEEELK KAFSQLGEVI YVKIPATKGY GYVQFKTRPS AEEAVQRMQG QVIGQQAVRI
301: SWSKNPGQDG WVTQADPNQW NGYYGYGQGY DAYAYGATQD PSVYAYGGYG YPQYPQQGEG TQDISNSAAG GVAGAEQELY DPLATPDVDK LNAAYLSVHA
401: SAILGRPMWQ RTSSLTSQLG K
Arabidopsis Description
RBP47B'Polyadenylate-binding protein RBP47B' [Source:UniProtKB/Swiss-Prot;Acc:Q8VXZ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.