Factsheet for Bra037538.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18570	Canola	nucleus	97.02	90.09
CDX95462	Canola	nucleus	95.53	88.71
Bra001735.1-P	Field mustard	nucleus	82.38	80.58
Bra022389.1-P	Field mustard	nucleus	84.37	79.81
AT3G19130.1	Thale cress	nucleus	80.15	74.25
Bra040663.1-P	Field mustard	nucleus	68.49	74.19
Bra018813.1-P	Field mustard	mitochondrion, nucleus	66.75	68.97
Solyc01g108500.2.1	Tomato	nucleus	55.58	54.24
VIT_03s0063g00850.t01	Wine grape	nucleus	55.58	54.11
PGSC0003DMT400066648	Potato	nucleus	55.58	53.33
KRH50251	Soybean	nucleus	55.83	52.2
GSMUA_Achr9P15210_001	Banana	nucleus	40.2	51.92
KRH71168	Soybean	nucleus	55.34	51.74
Solyc10g050860.1.1	Tomato	nucleus	54.09	50.93
GSMUA_Achr3P06840_001	Banana	nucleus	38.71	50.0
Bra014216.1-P	Field mustard	nucleus	70.22	49.48
GSMUA_Achr10P...	Banana	nucleus	38.46	49.36
Bra027446.1-P	Field mustard	cytosol	38.46	48.44
GSMUA_Achr6P10190_001	Banana	nucleus	37.22	47.92
GSMUA_Achr6P09470_001	Banana	nucleus	17.37	47.62
TraesCS5B01G241400.1	Wheat	nucleus	39.7	46.78
TraesCS5D01G250100.1	Wheat	nucleus	39.7	46.78
TraesCS5A01G243500.1	Wheat	nucleus	39.45	46.49
GSMUA_Achr3P01720_001	Banana	mitochondrion	42.68	42.68
Os02t0567900-01	Rice	cytosol, nucleus	27.3	42.47
Bra010418.1-P	Field mustard	nucleus	39.7	42.33
KXG35789	Sorghum	nucleus	45.41	41.78
Zm00001d020748_P002	Maize	plasma membrane	44.66	41.57
HORVU5Hr1G069180.3	Barley	nucleus, peroxisome, plastid	44.66	41.57
Os04t0449900-01	Rice	plastid	39.7	41.34
TraesCS6A01G204400.1	Wheat	mitochondrion	38.71	41.16
Zm00001d005912_P001	Maize	cytosol, nucleus, peroxisome, plastid	43.18	41.04
Bra019078.1-P	Field mustard	nucleus	41.44	40.53
Bra026387.1-P	Field mustard	nucleus	39.45	40.46
Bra002947.1-P	Field mustard	nucleus	38.96	39.65
TraesCS2B01G335700.1	Wheat	plastid	41.19	39.52
TraesCS2A01G317700.2	Wheat	plastid	41.44	39.39
TraesCS2D01G315400.2	Wheat	plastid	41.44	39.39
HORVU6Hr1G048390.1	Barley	cytoskeleton, nucleus, peroxisome	40.2	38.85
Bra031774.1-P	Field mustard	nucleus	37.72	38.58
EES10898	Sorghum	nucleus	40.45	38.53
TraesCS6D01G184600.1	Wheat	cytosol, nucleus, plastid	39.21	37.89
EES05289	Sorghum	plastid	39.95	37.01
Zm00001d050838_P001	Maize	plastid	39.21	36.74
HORVU2Hr1G078910.4	Barley	mitochondrion, nucleus	38.71	36.53
Os09t0462700-01	Rice	mitochondrion, nucleus, plastid	39.95	36.51
Bra002230.1-P	Field mustard	nucleus	37.22	35.8
TraesCS6B01G228100.1	Wheat	endoplasmic reticulum, plastid, vacuole	39.45	34.87
Bra006502.1-P	Field mustard	nucleus	36.48	34.19
Zm00001d025551_P002	Maize	plastid	38.21	34.07
Zm00001d016897_P002	Maize	endoplasmic reticulum, nucleus, peroxisome, plastid	39.7	33.76
Bra030985.1-P	Field mustard	mitochondrion, nucleus	24.07	23.21
Bra030908.1-P	Field mustard	nucleus	23.08	22.2
Bra037962.1-P	Field mustard	nucleus	23.08	22.09
Bra034301.1-P	Field mustard	mitochondrion	5.96	21.62
Bra037217.1-P	Field mustard	nucleus	13.65	14.44
Bra039603.1-P	Field mustard	nucleus	12.9	14.29
Bra013104.1-P	Field mustard	cytosol	19.85	12.99
Bra016371.1-P	Field mustard	plastid	18.86	12.77
Bra011488.1-P	Field mustard	cytosol, plastid	18.86	12.4
Bra015220.1-P	Field mustard	cytosol	17.62	12.28
Bra034603.1-P	Field mustard	cytosol, plastid	18.86	12.28
Bra007984.1-P	Field mustard	plastid	18.61	12.02
Bra032172.1-P	Field mustard	cytosol	18.86	11.8
Bra018797.1-P	Field mustard	cytosol	19.11	11.79
Bra016118.1-P	Field mustard	plastid	18.86	11.11
Bra039195.1-P	Field mustard	cytosol, nucleus, plastid	17.12	11.02
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	14.14	10.92
Bra003915.1-P	Field mustard	cytosol	17.37	10.8
Bra022413.1-P	Field mustard	cytosol	9.18	8.3
Bra039841.1-P	Field mustard	cytosol	2.48	4.69

Protein Annotations

EnsemblPlants:Bra037538.1	EnsemblPlants:Bra037538.1-P	EnsemblPlantsGene:Bra037538	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR43955	PANTHER:PTHR43955:SF6	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002544CB2	UniProt:M4F8X6	MapMan:16.9.4	:

Description

AT3G19130 (E=7e-116) ATRBP47B | ATRBP47B (RNA-binding protein 47B); RNA binding

Coordinates

chrA01:+:21724589..21726989

Molecular Weight (calculated)

44596.0 Da

IEP (calculated)

7.124

GRAVY (calculated)

-0.696

Length

403 amino acids

Sequence
(BLAST)

001: MQTTNCSDSS LSTPGATPPI QQPTPPPPQQ WQQPQQHWMT TAAAMQYPGA AAMNMMMMQQ QQMMMYPHQY VPYNQGPYHH PHFQYAPYHQ HQQHQHKPPH
101: ERGSGEDVKT LWVGDLLHWM DEAYLHTCFS HTGEVSSVKV IRNKLTCQSE GYGFVEFLTR AAAEEVLQTF SGSVMPNSEQ LFRLNWASFS TGEKRAVENG
201: PELSVFVGDL SPDVTDAMLQ ELFAERYPSV RSAKVVIDSN TGRSKGYGFV RFGDEGERSR ALTEMNGALC SNREMRVGIA TPKRAVANHQ QHSSQAVIVA
301: GGHGANGSMA NGSQADGESN NSTIMCNLKA TCLLFRKSAD DAIQSLNGTV IGKNTVRLSW GRTPNKWRGD SGQQWNGGYS RGQGYNNGGY ANHQDSNTYP
401: AET

Best Arabidopsis Sequence Match ( AT3G19130.1 )
(BLAST)

001: MQTTNGSDST LATSGATPPN QQTPPPPQQW QQQQQQQQQW MAAMQYPPAA AMMMMQQQQM LMYPHQYVPY NQGPYQQHHP QLHQYGSYQQ HQHQQHKAID
101: RGSGDDVKTL WVGDLLHWMD ETYLHSCFSH TGEVSSVKVI RNKLTSQSEG YGFVEFLSRA AAEEVLQNYS GSVMPNSDQP FRINWASFST GEKRAVENGP
201: DLSVFVGDLS PDVTDVLLHE TFSDRYPSVK SAKVVIDSNT GRSKGYGFVR FGDENERSRA LTEMNGAYCS NRQMRVGIAT PKRAIANQQQ HSSQAVILAG
301: GHGSNGSMGY GSQSDGESTN ATIFVGGIDP DVIDEDLRQP FSQFGEVVSV KIPVGKGCGF VQFADRKSAE DAIESLNGTV IGKNTVRLSW GRSPNKQWRG
401: DSGQQWNGGY SRGHGYNNGG GYANHHDSNN YHGEN

Arabidopsis Description

RBP47BPolyadenylate-binding protein RBP47B [Source:UniProtKB/Swiss-Prot;Acc:Q0WW84]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.