Skip to main content
crop-pal logo
Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, plastid, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • mitochondrion 2
  • plastid 1
  • peroxisome 1
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY56198 Canola cytosol 92.91 99.18
Bra034301.1-P Field mustard mitochondrion 18.01 84.68
CDY57754 Canola nucleus 26.05 63.85
AT3G16380.1 Thale cress nucleus 65.13 63.31
VIT_09s0002g03160.t01 Wine grape cytosol, nucleus, plastid, vacuole 37.16 40.76
GSMUA_Achr4P00840_001 Banana cytosol 27.97 30.17
KRH32613 Soybean cytosol 27.78 29.65
Bra013104.1-P Field mustard cytosol 34.1 28.9
KRH19986 Soybean cytosol 27.2 28.69
Bra011488.1-P Field mustard cytosol, plastid 32.95 28.06
Bra034603.1-P Field mustard cytosol, plastid 33.14 27.95
Bra018797.1-P Field mustard cytosol 34.1 27.26
Solyc09g008620.1.1 Tomato cytosol 31.42 27.11
PGSC0003DMT400033802 Potato cytosol 31.42 26.97
Bra016371.1-P Field mustard plastid 30.27 26.55
Bra039195.1-P Field mustard cytosol, nucleus, plastid 31.23 26.04
Bra032172.1-P Field mustard cytosol 31.99 25.93
Solyc10g085750.1.1 Tomato nucleus 30.46 25.56
Bra007984.1-P Field mustard plastid 30.27 25.32
TraesCS4A01G099500.1 Wheat cytosol 31.61 25.31
TraesCS4D01G205700.1 Wheat cytosol 31.61 25.27
Os03t0278500-01 Rice cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 31.23 25.19
PGSC0003DMT400021673 Potato cytosol 30.27 25.16
KRH67800 Soybean cytosol 30.46 25.16
HORVU4Hr1G059070.1 Barley cytosol 31.42 25.08
TraesCS4B01G204800.1 Wheat cytosol 31.23 25.04
KRG96088 Soybean cytosol 30.46 25.0
Bra003915.1-P Field mustard cytosol 30.46 24.54
Bra016118.1-P Field mustard plastid 31.61 24.12
Bra015220.1-P Field mustard cytosol 26.25 23.7
KXG40160 Sorghum nucleus 30.46 22.05
Zm00001d047790_P001 Maize plastid 30.27 21.5
Bra022413.1-P Field mustard cytosol 18.01 21.08
Bra027446.1-P Field mustard cytosol 12.84 20.94
Bra019078.1-P Field mustard nucleus 14.56 18.45
Bra031774.1-P Field mustard nucleus 13.41 17.77
Bra030985.1-P Field mustard mitochondrion, nucleus 14.18 17.7
Bra018813.1-P Field mustard mitochondrion, nucleus 13.22 17.69
Bra002947.1-P Field mustard nucleus 13.41 17.68
Bra039603.1-P Field mustard nucleus 12.07 17.31
Bra030908.1-P Field mustard nucleus 13.79 17.18
Bra037962.1-P Field mustard nucleus 13.79 17.1
Bra037217.1-P Field mustard nucleus 12.45 17.06
Bra022389.1-P Field mustard nucleus 13.79 16.9
Bra001735.1-P Field mustard nucleus 13.22 16.75
Bra010418.1-P Field mustard nucleus 12.07 16.67
Bra026387.1-P Field mustard nucleus 12.45 16.54
Bra002230.1-P Field mustard nucleus 13.03 16.23
Bra006502.1-P Field mustard nucleus 13.22 16.05
Bra037538.1-P Field mustard nucleus 10.92 14.14
Bra040663.1-P Field mustard nucleus 9.96 13.98
Bra014216.1-P Field mustard nucleus 10.54 9.62
Bra039841.1-P Field mustard cytosol 3.26 7.98
Protein Annotations
EnsemblPlants:Bra027167.1EnsemblPlants:Bra027167.1-PEnsemblPlantsGene:Bra027167Gene3D:3.30.70.330GO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0005488InterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sfInterPro:RBD_domain_sf
InterPro:RRM_domPANTHER:PTHR24012PANTHER:PTHR24012:SF674PFAM:PF00076PFscan:PS50102SEG:seg
SMART:SM00360SUPFAM:SSF54928UniParc:UPI000254782DUniProt:M4EEF5MapMan:17.4.2.5:
Description
AT3G16380 (E=5e-071) PAB6 | PAB6 (POLY(A) BINDING PROTEIN 6); RNA binding / translation initiation factor
Coordinates
chrA05:+:19471905..19474099
Molecular Weight (calculated)
57652.5 Da
IEP (calculated)
10.312
GRAVY (calculated)
-0.380
Length
522 amino acids
Sequence
(BLAST)
001: MAAIVKTEMQ AVGNIQSSSL ASLYVGDLSP DVTEADLTAK FSLTVPVVSA HLCRDSATAK SLRYAYVNFD SAITASNAMA CLNHTDLKGK TMRIMWSQKD
101: VAYRRRSGLG NLFVKNLDSS ITSSCLERMF SPFGVILSCK VAEENGQSKG FGFVQFATEQ SAVAARLASH GSMVDGKKLV VVMRDGMGRS RGFGFVNFCH
201: PENAKKAVES LNGKPHGTKK LFVGRALRKA ERMEMLKQKH KDNFVAKFNV GWFNLYVKNL SEAINETRLR EIFGSYGKIV SAKVMRDENG KSKGFGFVAF
301: STLDESKHAK RELHGFIVDG QSLVVRVAER KEDRFKRMQQ YHPVQSRHYM QAAPVPSAAQ PVPPSMEYKQ YYGVQPPRNY TQALPVPSPA QPVPPPSMSS
401: SPYGYLQPFH IGAYYYPMAT QVPQMSGHQN MTTYVPAGQA HLKEKRSVQL VYKRPGYTTF VKSGAKQKLV FKGQGDKTLE AGTCSTKGKT SAEKRKEVSS
501: HLMAMLTPNR NAAENLATLE VA
Best Arabidopsis Sequence Match ( AT3G16380.1 )
(BLAST)
001: MALVKTETQA LGNHQHSSRF GSLYVGDLSP DVTEKDLIDK FSLNVPVVSV HLCRNSVTGK SMCYAYINFD SPFSASNAMT RLNHSDLKGK AMRIMWSQRD
101: LAYRRRTRTG FANLYVKNLD SSITSSCLER MFCPFGSILS CKVVEENGQS KGFGFVQFDT EQSAVSARSA LHGSMVYGKK LFVAKFINKD ERAAMAGNQD
201: STNVYVKNLI ETVTDDCLHT LFSQYGTVSS VVVMRDGMGR SRGFGFVNFC NPENAKKAME SLCGLQLGSK KLFVGKALKK DERREMLKQK FSDNFIAKPN
301: MRWSNLYVKN LSESMNETRL REIFGCYGQI VSAKVMCHEN GRSKGFGFVC FSNCEESKQA KRYLNGFLVD GKPIVVRVAE RKEDRIKRLQ QYFQAQPRQY
401: TQAPSAPSPA QPVLSYVSSS YGCFQPFQVG TSYYYMGNQV PQMSGHQNIT TYVPAGKVPL KERRSMHLVY KHPAYPVAKR GAKQTLVFKG EVNRNLEAAT
501: CSKATTSEEN RKEERRLTLS GKLSPEVKVE ESGKQLQ
Arabidopsis Description
PAB6Polyadenylate-binding protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O04319]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.