Factsheet for PGSC0003DMT400021673

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g085750.1.1	Tomato	nucleus	95.54	96.46
VIT_08s0007g04380.t01	Wine grape	cytosol	67.99	67.35
KRG96088	Soybean	cytosol	67.68	66.82
KRH67800	Soybean	cytosol	67.2	66.77
PGSC0003DMT400033802	Potato	cytosol	62.58	64.64
KRH32613	Soybean	cytosol	49.04	62.99
KRH19986	Soybean	cytosol	49.04	62.22
AT2G36660.1	Thale cress	cytosol, plastid	50.64	52.22
GSMUA_Achr9P10860_001	Banana	cytosol	57.8	50.77
Os03t0278500-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	46.66	45.29
PGSC0003DMT400039842	Potato	cytosol	42.83	44.83
PGSC0003DMT400012508	Potato	nucleus	8.6	43.55
TraesCS4D01G205700.1	Wheat	cytosol	45.22	43.49
TraesCS4B01G204800.1	Wheat	cytosol	45.06	43.47
TraesCS4A01G099500.1	Wheat	cytosol	45.06	43.4
HORVU4Hr1G059070.1	Barley	cytosol	45.06	43.27
CDY72408	Canola	plastid	6.37	43.01
PGSC0003DMT400066245	Potato	extracellular	43.63	42.61
Bra034301.1-P	Field mustard	mitochondrion	7.17	40.54
KXG40160	Sorghum	nucleus	46.34	40.36
Zm00001d047790_P001	Maize	plastid	46.18	39.46
PGSC0003DMT400064531	Potato	cytosol	32.96	38.91
CDY57754	Canola	nucleus	12.58	37.09
CDY33264	Canola	mitochondrion, nucleus	11.46	36.0
CDY56198	Canola	cytosol	24.68	31.7
CDY30168	Canola	cytosol	27.07	31.6
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	25.16	30.27
PGSC0003DMT400018998	Potato	nucleus	15.61	23.45
PGSC0003DMT400014744	Potato	nucleus	13.54	23.35
PGSC0003DMT400023075	Potato	nucleus	13.22	22.86
PGSC0003DMT400020621	Potato	nucleus	14.33	22.73
PGSC0003DMT400007513	Potato	mitochondrion, nucleus	14.01	21.95
PGSC0003DMT400066072	Potato	nucleus	13.85	21.22
PGSC0003DMT400012431	Potato	mitochondrion, nucleus	13.85	20.86
PGSC0003DMT400013036	Potato	nucleus	13.22	20.75
PGSC0003DMT400029379	Potato	nucleus	13.06	20.5
PGSC0003DMT400058919	Potato	nucleus	13.54	20.38
PGSC0003DMT400042504	Potato	nucleus	13.38	20.34
PGSC0003DMT400057203	Potato	cytosol	12.9	20.1
PGSC0003DMT400066648	Potato	nucleus	13.38	20.0

Protein Annotations

Gene3D:1.10.1900.10	EntrezGene:102588075	MapMan:17.4.2.5	Gene3D:3.30.70.330	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	UniProt:M1AFJ0	InterPro:Nucleotide-bd_a/b_plait_sf
InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	EnsemblPlantsGene:PGSC0003DMG400008408
PGSC:PGSC0003DMG400008408	EnsemblPlants:PGSC0003DMT400021673	PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF455
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570
TIGRFAMs:TIGR01628	UniParc:UPI000295838C	RefSeq:XP_006338922.1	SEG:seg	:	:

Description

Polyadenylate-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008408]

Coordinates

chr10:+:53079423..53084655

Molecular Weight (calculated)

69047.1 Da

IEP (calculated)

9.015

GRAVY (calculated)

-0.412

Length

628 amino acids

Sequence
(BLAST)

001: MAVPPTVLAT PSSLYVGDLH HDVSDGQLFD FFSEFKSLAS VRVCRDSSTG RSLCYGYVNF VSPQDAIRAI EVKNNSTLNG KVMRVSWSLR DPDARRSGKG
101: NVFIKNISDT IDNAKLHEMF QKFGNILSCK IVTHEDGKSK GYGFVQFGSE ESADAAIEKL NGIMAGDKQM YVGKFVKKTD RVSPNPDAKY TNLYFKNLDV
201: DISEEHLREK FSGFGTIISL VIAKDESGAP KGFGFVNFDN PDDARKAAEA MNGSPVGSKT LYVARAQKKA EREQLLKRLF EERRREQIMK YQGSNVYVKN
301: IDDDVTEYEL HQLFSQCGTI TSAKVMQDEK GLSKGFGFVC FSTAEEAYNA VNTFYGFMLH RKPLYVAIAQ RKEERQAQLQ LQHAQRLAGL TGASAMYPGA
401: YPPLYYPGHG VVPQVPARPG LMYQSLAMRP GWGTNGFTNT PRPSYQPAPV PMIPNTYRPY RQNRGRMNGY MPASNVTNVQ PSGQPAVSSK DSQRAGQVRF
501: APNGQTRDVT RGSFVSNAAG SMAVGSAADG TEMLSTLLAS ANSDQQKQIL GERLYPLVGK HKPELASKIT GMLLEMDNAE LLLLLESPES LAAKVEEAVE
601: VLKLSNAKVS SQESLQPSFL SAPEVAVN

Best Arabidopsis Sequence Match ( AT2G36660.1 )
(BLAST)

001: MATVHAALHA ADASSSGSSS PVTASLYVGD LHPSVTEGIL YDAFAEFKSL TSVRLCKDAS SGRSLCYGYA NFLSRQDANL AIEKKNNSLL NGKMIRVMWS
101: VRAPDARRNG VGNVFVKNLP ESVTNAVLQD MFKKFGNIVS CKVATLEDGK SRGYGFVQFE QEDAAHAAIQ TLNSTIVADK EIYVGKFMKK TDRVKPEEKY
201: TNLYMKNLDA DVSEDLLREK FAEFGKIVSL AIAKDENRLC RGYAFVNFDN PEDARRAAET VNGTKFGSKC LYVGRAQKKA EREQLLREQF KEKHEEQKMI
301: AKVSNIYVKN VNVAVTEEEL RKHFSQCGTI TSTKLMCDEK GKSKGFGFVC FSTPEEAIDA VKTFHGQMFH GKPLYVAIAQ KKEDRKMQLQ VQFGNRVEAR
401: KSSSSASVNP GTYAPLYYTN THPGMVYQSY PLMWKSANMI GSSYPNSEAV TYPPMVANAP SKNRQNRIGK LDRNAVSYVP NVYQSTQMLP LSRDFSKQQH
501: SRTYGRGKEM KKSIQQRQSE TVGMEMQLLG ELLHPLVEKL EPQLANKITG MLLEMDKSEL LLLLKSPEDL AVRVDEAFEV LKSSKTNLTA PNTHRSDYLA
601: SGIAGVSIK

Arabidopsis Description

PAB7Polyadenylate-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQA8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.