Factsheet for PGSC0003DMT400007513

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g009230.1.1	Tomato	mitochondrion, nucleus	94.02	94.02
PGSC0003DMT400066072	Potato	nucleus	80.3	78.54
VIT_11s0016g00700.t01	Wine grape	mitochondrion, nucleus	78.3	74.41
PGSC0003DMT400012431	Potato	mitochondrion, nucleus	73.82	70.98
KRH02581	Soybean	mitochondrion	71.82	69.73
KRH19347	Soybean	mitochondrion, nucleus	71.07	69.51
GSMUA_Achr6P11660_001	Banana	mitochondrion	73.32	69.5
GSMUA_Achr10P...	Banana	mitochondrion	72.82	68.71
PGSC0003DMT400058919	Potato	nucleus	70.82	68.11
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	72.82	67.28
Zm00001d026528_P001	Maize	plastid	35.16	64.09
GSMUA_Achr11P...	Banana	nucleus	70.57	63.74
Os07t0615400-01	Rice	nucleus	67.08	63.0
Os11t0620100-01	Rice	nucleus	67.33	61.22
TraesCS4B01G148600.1	Wheat	nucleus	67.58	60.9
TraesCS2D01G176700.1	Wheat	nucleus	64.09	60.33
TraesCS4D01G150600.2	Wheat	nucleus	67.08	59.91
TraesCS2B01G195400.1	Wheat	nucleus	64.09	59.91
TraesCS2A01G169100.1	Wheat	nucleus	63.84	59.81
Zm00001d048824_P004	Maize	nucleus	66.08	59.28
HORVU4Hr1G033990.7	Barley	golgi, nucleus	64.84	59.23
TraesCS4A01G150000.1	Wheat	mitochondrion	66.08	59.15
EES08860	Sorghum	nucleus	64.59	58.73
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	72.07	58.27
HORVU2Hr1G031260.2	Barley	nucleus, plastid	64.34	51.91
Zm00001d026522_P001	Maize	nucleus	26.93	44.26
PGSC0003DMT400020621	Potato	nucleus	25.94	26.26
PGSC0003DMT400057203	Potato	cytosol	26.18	26.05
PGSC0003DMT400029379	Potato	nucleus	25.44	25.5
PGSC0003DMT400066648	Potato	nucleus	26.68	25.48
PGSC0003DMT400013036	Potato	nucleus	25.19	25.25
PGSC0003DMT400042504	Potato	nucleus	25.19	24.46
PGSC0003DMT400018998	Potato	nucleus	24.44	23.45
PGSC0003DMT400012508	Potato	nucleus	6.48	20.97
PGSC0003DMT400023075	Potato	nucleus	17.96	19.83
PGSC0003DMT400014744	Potato	nucleus	17.46	19.23
PGSC0003DMT400066245	Potato	extracellular	23.94	14.93
PGSC0003DMT400021673	Potato	cytosol	21.95	14.01
PGSC0003DMT400039842	Potato	cytosol	20.95	14.0
PGSC0003DMT400033802	Potato	cytosol	20.7	13.65
PGSC0003DMT400064531	Potato	cytosol	15.21	11.47

Protein Annotations

EntrezGene:102579731	MapMan:16.9.3	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M0ZT45	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
EnsemblPlantsGene:PGSC0003DMG400002900	PGSC:PGSC0003DMG400002900	EnsemblPlants:PGSC0003DMT400007513	PFscan:PS50102	PANTHER:PTHR44160	PANTHER:PTHR44160:SF4
InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928
UniParc:UPI0002965C2D	RefSeq:XP_006345255.1	SEG:seg	:	:	:

Description

Oligouridylate binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002900]

Coordinates

chr12:+:3165743..3172160

Molecular Weight (calculated)

43755.7 Da

IEP (calculated)

8.043

GRAVY (calculated)

-0.366

Length

401 amino acids

Sequence
(BLAST)

001: MMQQQRLRQQ QGLMQQSLYH PGHIASPQIE PILSGNLPPG FDSSTCRSVY VGNISSQVTE QLLQEVFSST GPLEGCKFIQ KDKSSYGFVD YFDRQSAALA
101: IVSLNGRQLF GQCIKVNWAY ASAKREDTSN HFNIFVGDLS PEVTDATLFA CFSVYPSCSD ARVMWDQKIG RSRGFGFVSF RDQQEAQSAI NDLNGKWLGS
201: RQIRCNWAAR GAGAGDDIRG SDARGAVELT TGTSDDGQQK ANEDAPENNP QYTTVYVGNL APDVTTIDLH RYFHALGAGV IADVRIQRDR GFGFVRYSNH
301: TEAARAIQLG NARILFGKPI KCSWGSKPTP PGSSTNPLPP PAIGQLPGIS AMGLAMYERQ VALARMTGMQ TLMQPQGQRI GAASQVLYDG GTASPQLPMY
401: Y

Best Arabidopsis Sequence Match ( AT1G17370.1 )
(BLAST)

001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ

Arabidopsis Description

UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.