CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02581	Soybean	mitochondrion	93.9	93.22
VIT_11s0016g00700.t01	Wine grape	mitochondrion, nucleus	80.98	78.67
KRH06218	Soybean	nucleus	76.1	75.0
KRH47641	Soybean	nucleus	77.07	74.88
Solyc07g042180.2.1	Tomato	nucleus	72.68	74.87
PGSC0003DMT400066072	Potato	nucleus	74.15	74.15
GSMUA_Achr6P11660_001	Banana	mitochondrion	75.37	73.05
GSMUA_Achr10P...	Banana	mitochondrion	75.12	72.47
Solyc12g009230.1.1	Tomato	mitochondrion, nucleus	70.0	71.57
PGSC0003DMT400007513	Potato	mitochondrion, nucleus	69.51	71.07
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	74.88	70.74
GSMUA_Achr11P...	Banana	nucleus	73.66	68.02
Os07t0615400-01	Rice	nucleus	68.78	66.04
Zm00001d026528_P001	Maize	plastid	34.88	65.0
TraesCS4B01G148600.1	Wheat	nucleus	70.0	64.49
Os11t0620100-01	Rice	nucleus	69.02	64.17
TraesCS4D01G150600.2	Wheat	nucleus	69.27	63.25
TraesCS4A01G150000.1	Wheat	mitochondrion	69.02	63.17
Zm00001d048824_P004	Maize	nucleus	68.78	63.09
HORVU4Hr1G033990.7	Barley	golgi, nucleus	67.32	62.87
EES08860	Sorghum	nucleus	67.56	62.81
KRH61952	Soybean	mitochondrion	64.88	62.59
TraesCS2D01G176700.1	Wheat	nucleus	64.88	62.44
TraesCS2B01G195400.1	Wheat	nucleus	65.12	62.24
TraesCS2A01G169100.1	Wheat	nucleus	64.63	61.92
KRH52613	Soybean	nucleus	65.61	61.84
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	73.41	60.69
HORVU2Hr1G031260.2	Barley	nucleus, plastid	65.37	53.92
Zm00001d026522_P001	Maize	nucleus	29.51	49.59
KRH02082	Soybean	nucleus	25.85	26.37
KRH51075	Soybean	endoplasmic reticulum	25.12	25.94
KRH20867	Soybean	nucleus	25.12	25.18
KRH11417	Soybean	nucleus	25.12	25.06
KRH61258	Soybean	nucleus	24.88	24.94
KRH51956	Soybean	nucleus	24.63	24.57
KRH05723	Soybean	nucleus	24.39	24.21
KRH15315	Soybean	nucleus	24.15	23.29
KRH29709	Soybean	cytosol	22.68	23.19
KRH71168	Soybean	nucleus	24.15	22.97
KRH24702	Soybean	nucleus	22.44	22.94
KRH50251	Soybean	nucleus	23.66	22.51
KRH23136	Soybean	cytosol	22.93	22.43
KRH10201	Soybean	mitochondrion, nucleus, plastid	14.39	20.07
KRH27525	Soybean	nucleus	17.56	19.78
KRH36396	Soybean	endoplasmic reticulum	17.32	19.45
KRH32613	Soybean	cytosol	20.24	16.97
KRH19986	Soybean	cytosol	20.49	16.97
KRH70673	Soybean	nucleus	23.41	14.81
KRH50336	Soybean	cytosol	23.41	14.75
KRH05656	Soybean	endoplasmic reticulum, nucleus	22.93	14.37
KRH67800	Soybean	cytosol	21.95	14.24
KRH15385	Soybean	nucleus	22.44	14.11
KRH61326	Soybean	cytosol, endoplasmic reticulum	21.46	13.97
KRH70233	Soybean	cytosol	21.22	13.83
KRG96088	Soybean	cytosol	20.98	13.52
KRH52023	Soybean	cytosol, endoplasmic reticulum	20.49	13.33
KRG91724	Soybean	cytosol	20.98	13.19
KRH08608	Soybean	endoplasmic reticulum	20.98	12.91

Protein Annotations

EntrezGene:100803322	MapMan:16.9.3	Gene3D:3.30.70.330	EMBL:ACUP02008176	EnsemblPlantsGene:GLYMA_13G112100	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1LY79	InterPro:IPR000504	InterPro:IPR012677
EnsemblPlants:KRH19347	ProteinID:KRH19347	ProteinID:KRH19347.1	ProteinID:KRH19348.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR44160	PANTHER:PTHR44160:SF4	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0001BA62F3	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:22547987..22552342

Molecular Weight (calculated)

44842.8 Da

IEP (calculated)

7.411

GRAVY (calculated)

-0.353

Length

410 amino acids

Sequence
(BLAST)

001: MQPQRLRQHA MLQPSLYHHP ALLTPPQIEP ILSGNLPPGF DSSSCRSVYV GNIHPQVTDS LLQELFSTAG ALEGCKLIRK EKSSYGFVDY FDRSSAAFAI
101: VTLNGRNIFG QPIKVNWAYA SSQREDTSGH FNIFVGDLSP EVTDATLYAC FSVYPSCSDA RVMWDQKTGR SRGFGFVSFR NQQDAQSAIN DLTGKWLGSR
201: QIRCNWATKG ASASDEKQSS DSKIVVELIN GSSEEGQETT NDDTPEKNPQ YTTVYVGNLA PEVTSVDLHQ HFHSLNAGII EDVRVQRDKG FGFVRYSTHA
301: EAALAIQMGN ARILFGKPIK CSWGSKPTPL GTASTPLLPP SANVPGFSLA GLAAYERQMA LSKMGGAHTL MHQQGQHALK HVDMGMGATG TGFDARFQNV
401: ATTQHLVYYQ

Best Arabidopsis Sequence Match ( AT1G17370.1 )
(BLAST)

001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ

Arabidopsis Description

UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.