CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71168	Soybean	nucleus	94.9	94.9
VIT_03s0063g00850.t01	Wine grape	nucleus	68.68	71.5
Solyc01g108500.2.1	Tomato	nucleus	65.43	68.28
GSMUA_Achr9P15210_001	Banana	nucleus	48.96	67.63
PGSC0003DMT400066648	Potato	nucleus	64.5	66.19
GSMUA_Achr3P06840_001	Banana	nucleus	47.33	65.38
Bra018813.1-P	Field mustard	mitochondrion, nucleus	58.47	64.62
GSMUA_Achr10P...	Banana	nucleus	46.87	64.33
GSMUA_Achr6P10190_001	Banana	nucleus	46.17	63.58
Solyc10g050860.1.1	Tomato	nucleus	62.88	63.32
CDY32840	Canola	nucleus	61.25	62.71
CDY16528	Canola	nucleus	61.48	62.5
TraesCS5B01G241400.1	Wheat	nucleus	49.42	62.28
TraesCS5D01G250100.1	Wheat	nucleus	49.42	62.28
TraesCS5A01G243500.1	Wheat	nucleus	49.19	61.99
KRH61258	Soybean	nucleus	58.7	61.86
CDY29341	Canola	nucleus	60.09	61.81
CDY68866	Canola	nucleus	59.16	61.45
CDY50959	Canola	nucleus	61.25	61.4
CDX92304	Canola	nucleus	60.09	61.08
CDY28101	Canola	nucleus	60.79	61.07
Bra022389.1-P	Field mustard	nucleus	60.09	60.8
CDX99265	Canola	nucleus	59.63	60.61
Bra040663.1-P	Field mustard	nucleus	51.97	60.22
AT3G19130.1	Thale cress	nucleus	60.56	60.0
KRH05723	Soybean	nucleus	57.31	59.81
CDY22988	Canola	nucleus	58.24	59.76
CDY18570	Canola	nucleus	60.09	59.68
Bra001735.1-P	Field mustard	nucleus	56.84	59.47
CDX82310	Canola	nucleus	56.84	59.47
KRH51956	Soybean	nucleus	56.61	59.37
CDX95462	Canola	nucleus	59.4	58.99
KRH15315	Soybean	nucleus	58.0	58.82
GSMUA_Achr6P09470_001	Banana	nucleus	19.72	57.82
Bra037538.1-P	Field mustard	nucleus	52.2	55.83
KRH51075	Soybean	endoplasmic reticulum	51.04	55.42
Os02t0567900-01	Rice	cytosol, nucleus	33.18	55.21
AT1G49600.3	Thale cress	nucleus	57.54	55.11
KRH02082	Soybean	nucleus	51.28	54.98
GSMUA_Achr3P01720_001	Banana	mitochondrion	50.81	54.34
KRH20867	Soybean	nucleus	51.51	54.28
KRH11417	Soybean	nucleus	51.28	53.77
KXG35789	Sorghum	nucleus	54.52	53.65
HORVU5Hr1G069180.3	Barley	nucleus, peroxisome, plastid	53.83	53.58
TraesCS6A01G204400.1	Wheat	mitochondrion	47.1	53.56
Zm00001d005912_P001	Maize	cytosol, nucleus, peroxisome, plastid	52.67	53.54
Zm00001d020748_P002	Maize	plasma membrane	53.36	53.12
Os04t0449900-01	Rice	plastid	46.4	51.68
Os09t0462700-01	Rice	mitochondrion, nucleus, plastid	51.04	49.89
HORVU6Hr1G048390.1	Barley	cytoskeleton, nucleus, peroxisome	47.33	48.92
TraesCS2B01G335700.1	Wheat	plastid	47.33	48.57
TraesCS6D01G184600.1	Wheat	cytosol, nucleus, plastid	46.87	48.44
TraesCS2A01G317700.2	Wheat	plastid	47.56	48.35
TraesCS2D01G315400.2	Wheat	plastid	47.56	48.35
EES10898	Sorghum	nucleus	46.87	47.75
HORVU2Hr1G078910.4	Barley	mitochondrion, nucleus	45.71	46.14
KRH23136	Soybean	cytosol	44.78	46.06
Zm00001d050838_P001	Maize	plastid	45.48	45.58
EES05289	Sorghum	plastid	45.71	45.29
TraesCS6B01G228100.1	Wheat	endoplasmic reticulum, plastid, vacuole	47.1	44.52
KRH29709	Soybean	cytosol	40.37	43.39
Zm00001d025551_P002	Maize	plastid	45.24	43.14
KRH24702	Soybean	nucleus	39.44	42.39
Zm00001d016897_P002	Maize	endoplasmic reticulum, nucleus, peroxisome, plastid	44.78	40.72
Bra014216.1-P	Field mustard	nucleus	53.13	40.03
KRH10201	Soybean	mitochondrion, nucleus, plastid	25.29	37.07
KRH52613	Soybean	nucleus	27.38	27.13
KRH61952	Soybean	mitochondrion	26.22	26.59
KRH47641	Soybean	nucleus	25.06	25.59
KRH06218	Soybean	nucleus	24.13	25.0
KRH02581	Soybean	mitochondrion	23.2	24.21
KRH19347	Soybean	mitochondrion, nucleus	22.51	23.66
KRH32613	Soybean	cytosol	20.19	17.79
KRH19986	Soybean	cytosol	20.42	17.78
KRH27525	Soybean	nucleus	14.15	16.76
KRH36396	Soybean	endoplasmic reticulum	14.15	16.71
KRH70233	Soybean	cytosol	21.81	14.94
KRH67800	Soybean	cytosol	21.81	14.87
KRH52023	Soybean	cytosol, endoplasmic reticulum	21.58	14.76
KRH61326	Soybean	cytosol, endoplasmic reticulum	21.58	14.76
KRH70673	Soybean	nucleus	21.81	14.51
KRH50336	Soybean	cytosol	21.81	14.44
KRH15385	Soybean	nucleus	21.81	14.42
KRG96088	Soybean	cytosol	21.11	14.31
KRH05656	Soybean	endoplasmic reticulum, nucleus	21.58	14.22
KRG91724	Soybean	cytosol	21.35	14.11
KRH08608	Soybean	endoplasmic reticulum	21.58	13.96

Protein Annotations

EntrezGene:100814564	MapMan:16.9.4	Gene3D:3.30.70.330	EMBL:ACUP02004674	EnsemblPlantsGene:GLYMA_07G210800	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1KLY0	InterPro:IPR000504	InterPro:IPR012677
EnsemblPlants:KRH50251	ProteinID:KRH50251	ProteinID:KRH50251.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR43955	PANTHER:PTHR43955:SF6	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0002338375	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:38176293..38180948

Molecular Weight (calculated)

47299.0 Da

IEP (calculated)

7.170

GRAVY (calculated)

-0.616

Length

431 amino acids

Sequence
(BLAST)

001: MAQPSSNGDL NNNQQGQVQQ QQQQWAAAQP HQYQQQWMAM QYPATAMAMM QQQMMMYPQH YMPYAHPHYP PPPPPPQSSH HHHHKQAAAA AAAAASSDEI
101: RTVWLGDLHH WMDENYLHNC FAHTGEVVSA KVIRNKQTGQ SEGYGFVEFY SRATAEKVLQ NYNGTMMPNT DQAFRLNWAT FSAGERRSSD ATSDLSIFVG
201: DLAIDVTDAM LQETFAGRYS SIKGAKVVID SNTGRSKGYG FVRFGDENER TRAMTEMNGV YCSSRPMRIG VATPKKTYGY QQQYSSQAVL LAGGHAANGA
301: VAQGSHSEGD LNNTTIFVGG LDSDTSDEDL RQPFLQFGEV VSVKIPVGKG CGFVQFADRK NAEEAIHALN GTVIGKQTVR LSWGRSPGNK HWRSDSNGGY
401: FGGQSYGGHG FAVRQNQDIA MQPATAIQGA S

Best Arabidopsis Sequence Match ( AT3G19130.1 )
(BLAST)

001: MQTTNGSDST LATSGATPPN QQTPPPPQQW QQQQQQQQQW MAAMQYPPAA AMMMMQQQQM LMYPHQYVPY NQGPYQQHHP QLHQYGSYQQ HQHQQHKAID
101: RGSGDDVKTL WVGDLLHWMD ETYLHSCFSH TGEVSSVKVI RNKLTSQSEG YGFVEFLSRA AAEEVLQNYS GSVMPNSDQP FRINWASFST GEKRAVENGP
201: DLSVFVGDLS PDVTDVLLHE TFSDRYPSVK SAKVVIDSNT GRSKGYGFVR FGDENERSRA LTEMNGAYCS NRQMRVGIAT PKRAIANQQQ HSSQAVILAG
301: GHGSNGSMGY GSQSDGESTN ATIFVGGIDP DVIDEDLRQP FSQFGEVVSV KIPVGKGCGF VQFADRKSAE DAIESLNGTV IGKNTVRLSW GRSPNKQWRG
401: DSGQQWNGGY SRGHGYNNGG GYANHHDSNN YHGEN

Arabidopsis Description

RBP47BPolyadenylate-binding protein RBP47B [Source:UniProtKB/Swiss-Prot;Acc:Q0WW84]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.