Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82310 | Canola | nucleus | 95.71 | 97.57 |
| CDX95462 | Canola | nucleus | 90.0 | 87.1 |
| CDY18570 | Canola | nucleus | 89.52 | 86.64 |
| CDX92304 | Canola | nucleus | 87.14 | 86.32 |
| CDX99265 | Canola | nucleus | 86.67 | 85.85 |
| AT3G19130.1 | Thale cress | nucleus | 85.0 | 82.07 |
| CDY16528 | Canola | nucleus | 76.19 | 75.47 |
| CDY29341 | Canola | nucleus | 75.24 | 75.42 |
| CDY28101 | Canola | nucleus | 76.9 | 75.29 |
| CDY50959 | Canola | nucleus | 76.9 | 75.12 |
| CDY68866 | Canola | nucleus | 73.81 | 74.7 |
| CDY32840 | Canola | nucleus | 74.29 | 74.11 |
| VIT_03s0063g00850.t01 | Wine grape | nucleus | 61.43 | 62.32 |
| Solyc01g108500.2.1 | Tomato | nucleus | 61.19 | 62.23 |
| PGSC0003DMT400066648 | Potato | nucleus | 61.43 | 61.43 |
| GSMUA_Achr9P15210_001 | Banana | nucleus | 44.29 | 59.62 |
| GSMUA_Achr3P06840_001 | Banana | nucleus | 43.81 | 58.97 |
| KRH50251 | Soybean | nucleus | 59.76 | 58.24 |
| GSMUA_Achr10P... | Banana | nucleus | 43.33 | 57.96 |
| Solyc10g050860.1.1 | Tomato | nucleus | 59.05 | 57.94 |
| KRH71168 | Soybean | nucleus | 59.29 | 57.77 |
| GSMUA_Achr6P10190_001 | Banana | nucleus | 42.38 | 56.87 |
| TraesCS5D01G250100.1 | Wheat | nucleus | 45.0 | 55.26 |
| TraesCS5B01G241400.1 | Wheat | nucleus | 44.76 | 54.97 |
| TraesCS5A01G243500.1 | Wheat | nucleus | 44.52 | 54.68 |
| Os02t0567900-01 | Rice | cytosol, nucleus | 32.38 | 52.51 |
| CDY52067 | Canola | nucleus | 51.19 | 51.31 |
| CDX95176 | Canola | nucleus | 50.95 | 51.07 |
| GSMUA_Achr3P01720_001 | Banana | mitochondrion | 48.57 | 50.62 |
| CDY06734 | Canola | mitochondrion | 36.19 | 49.84 |
| TraesCS6A01G204400.1 | Wheat | mitochondrion | 44.05 | 48.81 |
| HORVU5Hr1G069180.3 | Barley | nucleus, peroxisome, plastid | 49.52 | 48.04 |
| KXG35789 | Sorghum | nucleus | 50.0 | 47.95 |
| Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 48.1 | 47.64 |
| GSMUA_Achr6P09470_001 | Banana | nucleus | 16.67 | 47.62 |
| Zm00001d020748_P002 | Maize | plasma membrane | 49.05 | 47.58 |
| Os04t0449900-01 | Rice | plastid | 43.81 | 47.55 |
| CDX89287 | Canola | nucleus | 45.48 | 46.14 |
| CDY34835 | Canola | nucleus | 43.1 | 46.06 |
| CDY14290 | Canola | nucleus | 45.24 | 45.56 |
| HORVU6Hr1G048390.1 | Barley | cytoskeleton, nucleus, peroxisome | 45.24 | 45.56 |
| CDY17286 | Canola | nucleus | 43.57 | 45.19 |
| CDY66423 | Canola | nucleus | 45.71 | 45.07 |
| TraesCS2A01G317700.2 | Wheat | plastid | 45.48 | 45.05 |
| TraesCS2D01G315400.2 | Wheat | plastid | 45.48 | 45.05 |
| TraesCS2B01G335700.1 | Wheat | plastid | 45.0 | 45.0 |
| CDY46671 | Canola | nucleus | 45.71 | 44.76 |
| CDY29263 | Canola | nucleus | 44.52 | 44.63 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 44.29 | 44.6 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 45.24 | 44.6 |
| EES10898 | Sorghum | nucleus | 44.29 | 43.97 |
| CDY19874 | Canola | nucleus | 43.57 | 43.68 |
| Os09t0462700-01 | Rice | mitochondrion, nucleus, plastid | 45.48 | 43.31 |
| EES05289 | Sorghum | plastid | 44.05 | 42.53 |
| HORVU2Hr1G078910.4 | Barley | mitochondrion, nucleus | 43.1 | 42.39 |
| Zm00001d050838_P001 | Maize | plastid | 43.33 | 42.33 |
| TraesCS6B01G228100.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 44.76 | 41.23 |
| CDX92537 | Canola | nucleus | 40.24 | 40.33 |
| CDY13992 | Canola | nucleus | 40.24 | 40.33 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 44.29 | 39.24 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 40.0 | 39.07 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 39.76 | 38.84 |
| Zm00001d025551_P002 | Maize | plastid | 41.67 | 38.72 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 43.57 | 36.09 |
| CDY63384 | Canola | mitochondrion, nucleus | 26.43 | 26.55 |
| CDY61476 | Canola | nucleus | 26.19 | 26.25 |
| CDY02486 | Canola | nucleus | 26.19 | 26.19 |
| CDY51403 | Canola | nucleus | 25.71 | 25.71 |
| CDY33092 | Canola | nucleus | 25.95 | 25.65 |
| CDY67365 | Canola | plastid | 15.71 | 22.6 |
| CDX81822 | Canola | mitochondrion, nucleus | 26.43 | 20.37 |
| CDY72408 | Canola | plastid | 3.81 | 17.2 |
| CDY57754 | Canola | nucleus | 7.86 | 15.49 |
| CDY59539 | Canola | nucleus | 13.33 | 15.3 |
| CDX69025 | Canola | nucleus, plastid | 21.9 | 15.06 |
| CDY66740 | Canola | nucleus | 13.57 | 14.96 |
| CDY67617 | Canola | nucleus | 13.57 | 14.96 |
| CDY43894 | Canola | nucleus | 12.86 | 14.84 |
| CDX89664 | Canola | cytosol | 21.67 | 14.82 |
| CDX75397 | Canola | nucleus, plastid | 21.67 | 14.77 |
| CDY62723 | Canola | cytosol | 21.67 | 14.75 |
| CDY51957 | Canola | cytosol, plastid | 21.67 | 14.7 |
| CDY54068 | Canola | cytosol | 22.62 | 14.55 |
| CDY51045 | Canola | cytosol | 22.38 | 14.4 |
| CDY56198 | Canola | cytosol | 16.67 | 14.31 |
| CDY38939 | Canola | nucleus | 21.9 | 14.29 |
| CDX89562 | Canola | nucleus | 21.9 | 14.26 |
| CDX71223 | Canola | cytosol | 21.67 | 14.26 |
| CDY33264 | Canola | mitochondrion, nucleus | 6.67 | 14.0 |
| CDY46079 | Canola | nucleus | 20.71 | 13.83 |
| CDY36634 | Canola | nucleus | 20.95 | 13.56 |
| CDY30168 | Canola | cytosol | 17.14 | 13.38 |
| CDY67921 | Canola | nucleus | 20.48 | 13.33 |
| CDY41472 | Canola | cytosol, plastid | 20.24 | 13.26 |
| CDX72826 | Canola | plastid | 21.19 | 13.01 |
| CDX96344 | Canola | plastid | 21.19 | 13.01 |
| CDY03685 | Canola | nucleus | 19.76 | 12.91 |
| CDY37935 | Canola | nucleus | 20.0 | 12.9 |
| CDY36684 | Canola | plastid | 20.24 | 12.78 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 19.52 | 12.65 |
| CDX79296 | Canola | plastid | 5.24 | 12.02 |
| CDX92325 | Canola | nucleus | 5.71 | 7.45 |
| CDY67364 | Canola | nucleus | 4.76 | 6.83 |
| CDX91689 | Canola | nucleus | 3.57 | 4.92 |
| CDY37229 | Canola | cytosol | 2.14 | 4.23 |
| CDX79295 | Canola | cytosol, plastid | 0.0 | 0.0 |
| CDY08990 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | GO:A0A078GED3 | UniProt:A0A078GED3 | EnsemblPlants:CDY22988 | ProteinID:CDY22988 |
| ProteinID:CDY22988.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00021411001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43955 |
| PANTHER:PTHR43955:SF6 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE1117 |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g40810DBnaC03g40810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GED3]
Coordinates
chrLK032138:+:475133..478588
Molecular Weight (calculated)
46660.1 Da
IEP (calculated)
6.392
GRAVY (calculated)
-0.723
Length
420 amino acids
Sequence
(BLAST)
(BLAST)
001: MQTTNGSDSS LATPGGTTPP PPQQWQQQQQ QHWMAAMQYP GAAAMMMMQQ QQQMMMYPHQ YVPYNYQQHP QFQYASYHQQ QEHKTHERGS GDDVKTLWIG
101: DLLHWMDETY LHTCFSHTGE VSSVKVIRNK LTCQSEGYGF VEFLTRAAAE ELLQNFNGSV MPNSEQLFRL NWASFSTGEK RAVENGPELS IFVGDLSPDV
201: TDTLLQELFV ERYPSVKSAK VVIDSNTGRS KGYGFVRFGD ESERSRALTE MNGAYCSNRQ MRVGVATPKR AVANHHPSQA VIVAGGHGAN GFMAHGSQSD
301: GESNNSTIFV GGIDPDVTEE DLRQPFTQFG EVVSVKIPVG KGCGFVQLDN RKSADDAIQS LNGTVIGKNT VRLSWGRTPN KQWRGDSGQQ WNGGYSQRGQ
401: GYNNGGYANN HDSNNYPTES
101: DLLHWMDETY LHTCFSHTGE VSSVKVIRNK LTCQSEGYGF VEFLTRAAAE ELLQNFNGSV MPNSEQLFRL NWASFSTGEK RAVENGPELS IFVGDLSPDV
201: TDTLLQELFV ERYPSVKSAK VVIDSNTGRS KGYGFVRFGD ESERSRALTE MNGAYCSNRQ MRVGVATPKR AVANHHPSQA VIVAGGHGAN GFMAHGSQSD
301: GESNNSTIFV GGIDPDVTEE DLRQPFTQFG EVVSVKIPVG KGCGFVQLDN RKSADDAIQS LNGTVIGKNT VRLSWGRTPN KQWRGDSGQQ WNGGYSQRGQ
401: GYNNGGYANN HDSNNYPTES
001: MQTTNGSDST LATSGATPPN QQTPPPPQQW QQQQQQQQQW MAAMQYPPAA AMMMMQQQQM LMYPHQYVPY NQGPYQQHHP QLHQYGSYQQ HQHQQHKAID
101: RGSGDDVKTL WVGDLLHWMD ETYLHSCFSH TGEVSSVKVI RNKLTSQSEG YGFVEFLSRA AAEEVLQNYS GSVMPNSDQP FRINWASFST GEKRAVENGP
201: DLSVFVGDLS PDVTDVLLHE TFSDRYPSVK SAKVVIDSNT GRSKGYGFVR FGDENERSRA LTEMNGAYCS NRQMRVGIAT PKRAIANQQQ HSSQAVILAG
301: GHGSNGSMGY GSQSDGESTN ATIFVGGIDP DVIDEDLRQP FSQFGEVVSV KIPVGKGCGF VQFADRKSAE DAIESLNGTV IGKNTVRLSW GRSPNKQWRG
401: DSGQQWNGGY SRGHGYNNGG GYANHHDSNN YHGEN
101: RGSGDDVKTL WVGDLLHWMD ETYLHSCFSH TGEVSSVKVI RNKLTSQSEG YGFVEFLSRA AAEEVLQNYS GSVMPNSDQP FRINWASFST GEKRAVENGP
201: DLSVFVGDLS PDVTDVLLHE TFSDRYPSVK SAKVVIDSNT GRSKGYGFVR FGDENERSRA LTEMNGAYCS NRQMRVGIAT PKRAIANQQQ HSSQAVILAG
301: GHGSNGSMGY GSQSDGESTN ATIFVGGIDP DVIDEDLRQP FSQFGEVVSV KIPVGKGCGF VQFADRKSAE DAIESLNGTV IGKNTVRLSW GRSPNKQWRG
401: DSGQQWNGGY SRGHGYNNGG GYANHHDSNN YHGEN
Arabidopsis Description
RBP47BPolyadenylate-binding protein RBP47B [Source:UniProtKB/Swiss-Prot;Acc:Q0WW84]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.