Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 99.07 | 99.07 |
| Bra006502.1-P | Field mustard | nucleus | 98.84 | 98.84 |
| CDX92537 | Canola | nucleus | 85.81 | 88.07 |
| AT5G19350.1 | Thale cress | cytosol | 86.98 | 88.0 |
| CDY13992 | Canola | nucleus | 84.42 | 86.63 |
| KRH29709 | Soybean | cytosol | 62.79 | 67.33 |
| KRH24702 | Soybean | nucleus | 61.63 | 66.08 |
| Solyc11g065880.1.1 | Tomato | nucleus | 63.49 | 65.47 |
| KRH23136 | Soybean | cytosol | 63.72 | 65.39 |
| PGSC0003DMT400018998 | Potato | nucleus | 62.79 | 64.59 |
| HORVU4Hr1G075700.5 | Barley | nucleus | 61.86 | 63.94 |
| TraesCS4A01G014200.1 | Wheat | nucleus | 61.86 | 63.94 |
| VIT_06s0004g02040.t01 | Wine grape | nucleus | 66.05 | 63.82 |
| Os03t0174100-02 | Rice | nucleus | 60.93 | 62.98 |
| EER95414 | Sorghum | nucleus | 60.7 | 62.89 |
| GSMUA_Achr8P31320_001 | Banana | nucleus | 57.91 | 62.25 |
| KRH10201 | Soybean | mitochondrion, nucleus, plastid | 41.16 | 60.2 |
| TraesCS4D01G288600.1 | Wheat | nucleus | 61.16 | 57.55 |
| TraesCS4B01G289600.1 | Wheat | nucleus | 61.4 | 57.52 |
| CDY34835 | Canola | nucleus | 45.35 | 49.62 |
| CDY06734 | Canola | mitochondrion | 32.79 | 46.23 |
| CDX89287 | Canola | nucleus | 44.42 | 46.14 |
| CDY29263 | Canola | nucleus | 44.19 | 45.35 |
| CDY46671 | Canola | nucleus | 45.12 | 45.22 |
| CDY14290 | Canola | nucleus | 43.49 | 44.84 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 44.19 | 44.6 |
| CDY66423 | Canola | nucleus | 43.95 | 44.37 |
| CDY17286 | Canola | nucleus | 40.7 | 43.21 |
| CDY19874 | Canola | nucleus | 41.4 | 42.48 |
| CDX95176 | Canola | nucleus | 40.23 | 41.29 |
| CDY52067 | Canola | nucleus | 40.23 | 41.29 |
| CDY68866 | Canola | nucleus | 39.53 | 40.96 |
| CDX99265 | Canola | nucleus | 39.77 | 40.33 |
| CDY29341 | Canola | nucleus | 39.07 | 40.1 |
| CDY22988 | Canola | nucleus | 39.07 | 40.0 |
| CDY32840 | Canola | nucleus | 39.07 | 39.91 |
| CDX92304 | Canola | nucleus | 39.3 | 39.86 |
| CDY16528 | Canola | nucleus | 39.3 | 39.86 |
| CDX82310 | Canola | nucleus | 38.14 | 39.81 |
| CDY50959 | Canola | nucleus | 39.53 | 39.53 |
| CDY28101 | Canola | nucleus | 39.3 | 39.39 |
| CDY18570 | Canola | nucleus | 38.84 | 38.48 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 45.12 | 38.26 |
| CDX95462 | Canola | nucleus | 38.6 | 38.25 |
| Zm00001d027869_P002 | Maize | nucleus | 48.84 | 27.52 |
| CDY63384 | Canola | mitochondrion, nucleus | 22.09 | 22.73 |
| CDY61476 | Canola | nucleus | 21.86 | 22.43 |
| CDY02486 | Canola | nucleus | 21.86 | 22.38 |
| CDY51403 | Canola | nucleus | 21.86 | 22.38 |
| CDY33092 | Canola | nucleus | 22.09 | 22.35 |
| CDY67365 | Canola | plastid | 14.42 | 21.23 |
| CDX81822 | Canola | mitochondrion, nucleus | 23.26 | 18.35 |
| CDX75397 | Canola | nucleus, plastid | 25.58 | 17.86 |
| CDX69025 | Canola | nucleus, plastid | 25.35 | 17.84 |
| CDY62723 | Canola | cytosol | 25.12 | 17.5 |
| CDY59539 | Canola | nucleus | 14.88 | 17.49 |
| CDY51957 | Canola | cytosol, plastid | 24.88 | 17.29 |
| CDY72408 | Canola | plastid | 3.72 | 17.2 |
| CDY43894 | Canola | nucleus | 14.42 | 17.03 |
| CDY67617 | Canola | nucleus | 14.88 | 16.8 |
| CDY66740 | Canola | nucleus | 14.88 | 16.8 |
| CDX89664 | Canola | cytosol | 23.95 | 16.78 |
| CDX71223 | Canola | cytosol | 24.19 | 16.3 |
| CDX89562 | Canola | nucleus | 23.95 | 15.97 |
| CDY38939 | Canola | nucleus | 23.72 | 15.84 |
| CDY54068 | Canola | cytosol | 23.72 | 15.62 |
| CDY51045 | Canola | cytosol | 23.49 | 15.47 |
| CDY36634 | Canola | nucleus | 23.02 | 15.25 |
| CDY67921 | Canola | nucleus | 22.79 | 15.19 |
| CDY46079 | Canola | nucleus | 21.63 | 14.79 |
| CDX79296 | Canola | plastid | 6.28 | 14.75 |
| CDY41472 | Canola | cytosol, plastid | 21.86 | 14.66 |
| CDY56198 | Canola | cytosol | 16.28 | 14.31 |
| CDY03685 | Canola | nucleus | 21.4 | 14.31 |
| CDY37935 | Canola | nucleus | 20.93 | 13.82 |
| CDY36684 | Canola | plastid | 21.16 | 13.68 |
| CDY57754 | Canola | nucleus | 6.74 | 13.62 |
| CDX72826 | Canola | plastid | 21.63 | 13.6 |
| CDX96344 | Canola | plastid | 21.63 | 13.6 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 20.47 | 13.58 |
| CDY33264 | Canola | mitochondrion, nucleus | 6.28 | 13.5 |
| CDY30168 | Canola | cytosol | 16.74 | 13.38 |
| CDY67364 | Canola | nucleus | 7.67 | 11.26 |
| CDX92325 | Canola | nucleus | 7.21 | 9.63 |
| CDY37229 | Canola | cytosol | 4.42 | 8.92 |
| CDY08990 | Canola | cytosol | 1.86 | 8.08 |
| CDX79295 | Canola | cytosol, plastid | 1.86 | 8.0 |
| CDX91689 | Canola | nucleus | 5.35 | 7.54 |
Protein Annotations
| EnsemblPlants:CDX70874 | EnsemblPlantsGene:GSBRNA2T00140772001 | Gene3D:3.30.70.330 | GO:A0A078C3U1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR43955 | PANTHER:PTHR43955:SF8 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDX70874 | ProteinID:CDX70874.1 |
| SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE3739 | MapMan:16.9.4 | : |
Description
BnaC03g09580D
Coordinates
chrLK031791:+:2531022..2533397
Molecular Weight (calculated)
46941.1 Da
IEP (calculated)
5.422
GRAVY (calculated)
-0.359
Length
430 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMMMPPQQQ GGYHHPQTLE EVRTLWIGDL QYWVDENYLS SCFSQTGELV SVKVIRNKIT GQPEGYGFIE FVSHAAAERT LQTYNGTLMP GTEVAFRLNW
101: ASFGSGQKVD AGPDHSIFVG DLAPDVTDYL LHETFRVHYS SVRGAKVVTD PSTGRSKGYG FVKFADESER NKAMSEMNGL YCSTRPMRIS VATPRKTVGV
201: QQQYVTKAAY PVPVPVPSAV AAPSYVAQPA QVLAPENDIT CTTVLIANLD PNVTEEELKK AFSPLGEVIY VNIPATKGYG YVQFKTRPSA EEAIQKMQGH
301: VIGQQAIRIS WSKNPGQDGY VTQADPSQWN GYYGYGQGYE AYAYGAAQDP SVYAYGGYGY PQYPQQGEAT QEVTNSAAGG VAGAEQELYD PMATPDVEKL
401: NAVSLSVHAN AILGRLLWQR TSALSSQLGK
101: ASFGSGQKVD AGPDHSIFVG DLAPDVTDYL LHETFRVHYS SVRGAKVVTD PSTGRSKGYG FVKFADESER NKAMSEMNGL YCSTRPMRIS VATPRKTVGV
201: QQQYVTKAAY PVPVPVPSAV AAPSYVAQPA QVLAPENDIT CTTVLIANLD PNVTEEELKK AFSPLGEVIY VNIPATKGYG YVQFKTRPSA EEAIQKMQGH
301: VIGQQAIRIS WSKNPGQDGY VTQADPSQWN GYYGYGQGYE AYAYGAAQDP SVYAYGGYGY PQYPQQGEAT QEVTNSAAGG VAGAEQELYD PMATPDVEKL
401: NAVSLSVHAN AILGRLLWQR TSALSSQLGK
001: MAMMHPPQPP QGSYHHPQTL EEVRTLWIGD LQYWVDENYL TSCFSQTGEL VSVKVIRNKI TGQPEGYGFI EFISHAAAER TLQTYNGTQM PGTELTFRLN
101: WASFGSGQKV DAGPDHSIFV GDLAPDVTDY LLQETFRVHY SSVRGAKVVT DPSTGRSKGY GFVKFAEESE RNRAMAEMNG LYCSTRPMRI SAATPKKNVG
201: VQQQYVTKAV YPVTVPSAVA APVQAYVAPP ESDVTCTTIS VANLDQNVTE EELKKAFSQL GEVIYVKIPA TKGYGYVQFK TRPSAEEAVQ RMQGQVIGQQ
301: AVRISWSKNP GQDGWVTQAD PNQWNGYYGY GQGYDAYAYG ATQDPSVYAY GGYGYPQYPQ QGEGTQDISN SAAGGVAGAE QELYDPLATP DVDKLNAAYL
401: SVHASAILGR PMWQRTSSLT SQLGK
101: WASFGSGQKV DAGPDHSIFV GDLAPDVTDY LLQETFRVHY SSVRGAKVVT DPSTGRSKGY GFVKFAEESE RNRAMAEMNG LYCSTRPMRI SAATPKKNVG
201: VQQQYVTKAV YPVTVPSAVA APVQAYVAPP ESDVTCTTIS VANLDQNVTE EELKKAFSQL GEVIYVKIPA TKGYGYVQFK TRPSAEEAVQ RMQGQVIGQQ
301: AVRISWSKNP GQDGWVTQAD PNQWNGYYGY GQGYDAYAYG ATQDPSVYAY GGYGYPQYPQ QGEGTQDISN SAAGGVAGAE QELYDPLATP DVDKLNAAYL
401: SVHASAILGR PMWQRTSSLT SQLGK
Arabidopsis Description
RBP47B'Polyadenylate-binding protein RBP47B' [Source:UniProtKB/Swiss-Prot;Acc:Q8VXZ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.