CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0174100-02	Rice	nucleus	87.47	87.26
TraesCS4A01G014200.1	Wheat	nucleus	84.58	84.38
HORVU4Hr1G075700.5	Barley	nucleus	84.34	84.13
TraesCS4B01G289600.1	Wheat	nucleus	84.58	76.47
TraesCS4D01G288600.1	Wheat	nucleus	84.1	76.37
GSMUA_Achr8P31320_001	Banana	nucleus	69.64	72.25
VIT_06s0004g02040.t01	Wine grape	nucleus	73.73	68.76
PGSC0003DMT400018998	Potato	nucleus	68.43	67.94
Solyc11g065880.1.1	Tomato	nucleus	67.71	67.39
KRH23136	Soybean	cytosol	67.23	66.59
KRH29709	Soybean	cytosol	62.89	65.09
AT5G19350.1	Thale cress	cytosol	65.54	64.0
Bra002230.1-P	Field mustard	nucleus	64.58	63.96
CDX92537	Canola	nucleus	64.58	63.96
CDY13992	Canola	nucleus	64.34	63.72
KRH24702	Soybean	nucleus	61.45	63.59
CDX88893	Canola	cytosol, nucleus, peroxisome	63.13	60.93
KRH10201	Soybean	mitochondrion, nucleus, plastid	43.13	60.88
Bra006502.1-P	Field mustard	nucleus	62.89	60.7
CDX70874	Canola	cytosol, nucleus, peroxisome	62.89	60.7
OQU91463	Sorghum	nucleus	50.84	51.59
KXG24662	Sorghum	nucleus	52.53	47.81
KXG27152	Sorghum	nucleus	49.4	47.23
KXG35789	Sorghum	nucleus	47.47	44.98
EES10898	Sorghum	nucleus	44.82	43.97
EES05289	Sorghum	plastid	44.82	42.76
KXG36337	Sorghum	nucleus	48.43	42.14
EER95718	Sorghum	nucleus	35.42	40.61
Zm00001d027869_P002	Maize	nucleus	70.12	38.14
EES15356	Sorghum	nucleus	23.37	21.7
EES08860	Sorghum	nucleus	22.41	21.09
EER94133	Sorghum	nucleus	15.42	18.03
EES12460	Sorghum	plastid	23.61	14.76
KXG35258	Sorghum	cytosol	21.93	13.87
EER89984	Sorghum	plastid	20.0	13.15
KXG40160	Sorghum	nucleus	21.45	12.34
KXG27463	Sorghum	nucleus	20.72	7.99

Protein Annotations

MapMan:16.9.4	Gene3D:3.30.70.330	EntrezGene:8059803	UniProt:C5WVW4	EnsemblPlants:EER95414	ProteinID:EER95414
ProteinID:EER95414.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43955
PANTHER:PTHR43955:SF8	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3001G487100	SUPFAM:SSF54928
unigene:Sbi.385	UniParc:UPI0001A82EFA	RefSeq:XP_002468416.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:75733314..75737649

Molecular Weight (calculated)

46006.7 Da

IEP (calculated)

5.252

GRAVY (calculated)

-0.514

Length

415 amino acids

Sequence
(BLAST)

001: MAAPYHQPTS LEEVRTLWIG DLQYWTDENY LYSCFAHTGE VQSVKIIRNK VTSLPEGYGF IEFVSHEAAE KILQTYNGTQ MPGTEHTFRL NWASFSSGER
101: RPDPGSDHSI FVGDLAPDVT DYLLQETFRV NYPSVRGAKV VTDPNTGRSK GYGFVKFADE NEKNRAMTEM NGVYCSTRPM RISAAIPKKS TGSQLQYSAA
201: KAVYPATAYA MPQLQAVLPD SDPTNTTIFI GNLDPNVTED ELRQICVQFG ELIYVKIPVG KGCGFVQYAS RASAEEAVQR LHGTMIGQQA VRLSWGRSPA
301: SKQDPSAVWS QQADPNQWAN TYYGYGYDAY GYAQDPSYAY GAYAGYSQYP QQIEGGVDAT SVAGSHPGME QKEEPYDPMN IPDVDKLNAS YMAVHGRAML
401: GRSLWLKTNP LPQPT

Best Arabidopsis Sequence Match ( AT5G19350.1 )
(BLAST)

001: MAMMHPPQPP QGSYHHPQTL EEVRTLWIGD LQYWVDENYL TSCFSQTGEL VSVKVIRNKI TGQPEGYGFI EFISHAAAER TLQTYNGTQM PGTELTFRLN
101: WASFGSGQKV DAGPDHSIFV GDLAPDVTDY LLQETFRVHY SSVRGAKVVT DPSTGRSKGY GFVKFAEESE RNRAMAEMNG LYCSTRPMRI SAATPKKNVG
201: VQQQYVTKAV YPVTVPSAVA APVQAYVAPP ESDVTCTTIS VANLDQNVTE EELKKAFSQL GEVIYVKIPA TKGYGYVQFK TRPSAEEAVQ RMQGQVIGQQ
301: AVRISWSKNP GQDGWVTQAD PNQWNGYYGY GQGYDAYAYG ATQDPSVYAY GGYGYPQYPQ QGEGTQDISN SAAGGVAGAE QELYDPLATP DVDKLNAAYL
401: SVHASAILGR PMWQRTSSLT SQLGK

Arabidopsis Description

RBP47B'Polyadenylate-binding protein RBP47B' [Source:UniProtKB/Swiss-Prot;Acc:Q8VXZ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.