Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 2
- golgi 2
- plastid 5
- nucleus 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34110.1 | EES08246 | AT2G43970.1 | 21798944 |
| AT4G34110.1 | EES15258 | AT2G43970.1 | 21798944 |
| AT4G34110.1 | EES16897 | AT2G43970.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d003106_P003 | Maize | extracellular, mitochondrion, plasma membrane | 95.33 | 97.09 |
| Zm00001d025801_P005 | Maize | cytosol, plastid | 94.73 | 96.47 |
| HORVU2Hr1G087390.3 | Barley | cytosol, mitochondrion, nucleus | 79.52 | 86.42 |
| Os04t0504800-01 | Rice | plasma membrane | 83.58 | 84.22 |
| TraesCS2D01G358000.1 | Wheat | cytosol | 84.19 | 84.19 |
| TraesCS2A01G359000.1 | Wheat | cytosol | 84.19 | 84.06 |
| TraesCS2B01G378400.1 | Wheat | nucleus | 84.04 | 83.91 |
| VIT_18s0001g10170.t01 | Wine grape | cytosol | 69.43 | 72.03 |
| GSMUA_Achr4P09890_001 | Banana | cytosol | 70.63 | 71.93 |
| GSMUA_AchrUn_... | Banana | cytosol | 70.63 | 71.93 |
| GSMUA_Achr9P00990_001 | Banana | cytosol | 68.98 | 70.35 |
| KRH70673 | Soybean | nucleus | 68.52 | 70.22 |
| KRH15385 | Soybean | nucleus | 68.52 | 69.79 |
| KRH50336 | Soybean | cytosol | 68.37 | 69.74 |
| VIT_07s0031g00210.t01 | Wine grape | cytosol | 67.77 | 68.81 |
| KRH05656 | Soybean | endoplasmic reticulum, nucleus | 67.77 | 68.81 |
| CDY51957 | Canola | cytosol, plastid | 62.2 | 66.72 |
| Bra034603.1-P | Field mustard | cytosol, plastid | 62.05 | 66.56 |
| CDY62723 | Canola | cytosol | 61.75 | 66.45 |
| Bra011488.1-P | Field mustard | cytosol, plastid | 60.84 | 65.91 |
| Bra018797.1-P | Field mustard | cytosol | 64.76 | 65.85 |
| CDY51045 | Canola | cytosol | 64.76 | 65.85 |
| AT4G34110.1 | Thale cress | cytosol | 62.35 | 65.82 |
| CDX89664 | Canola | cytosol | 60.84 | 65.8 |
| CDX69025 | Canola | nucleus, plastid | 60.39 | 65.63 |
| CDY54068 | Canola | cytosol | 64.46 | 65.54 |
| KRH52023 | Soybean | cytosol, endoplasmic reticulum | 61.9 | 65.24 |
| CDX75397 | Canola | nucleus, plastid | 60.39 | 65.1 |
| KXG35258 | Sorghum | cytosol | 64.31 | 65.09 |
| KRH61326 | Soybean | cytosol, endoplasmic reticulum | 61.6 | 64.92 |
| CDX71223 | Canola | cytosol | 62.35 | 64.89 |
| Bra013104.1-P | Field mustard | cytosol | 59.94 | 64.61 |
| CDY67364 | Canola | nucleus | 28.31 | 64.16 |
| AT1G49760.1 | Thale cress | cytosol | 64.61 | 63.93 |
| CDY36634 | Canola | nucleus | 60.54 | 61.94 |
| Bra015220.1-P | Field mustard | cytosol | 53.46 | 61.42 |
| CDX79296 | Canola | plastid | 16.87 | 61.2 |
| CDY67365 | Canola | plastid | 26.66 | 60.62 |
| VIT_03s0063g00070.t01 | Wine grape | cytosol, plastid | 68.22 | 57.56 |
| GSMUA_Achr8P24250_001 | Banana | cytosol, plastid | 55.12 | 56.48 |
| PGSC0003DMT400012508 | Potato | nucleus | 9.64 | 51.61 |
| EER89984 | Sorghum | plastid | 43.07 | 45.32 |
| Bra022413.1-P | Field mustard | cytosol | 29.37 | 43.72 |
| CDX92325 | Canola | nucleus | 19.73 | 40.68 |
| CDX91689 | Canola | nucleus | 15.66 | 34.1 |
| KXG40160 | Sorghum | nucleus | 36.75 | 33.84 |
| EER94133 | Sorghum | nucleus | 16.42 | 30.7 |
| OQU91463 | Sorghum | nucleus | 14.61 | 23.72 |
| EER95414 | Sorghum | nucleus | 14.76 | 23.61 |
| EER95718 | Sorghum | nucleus | 12.5 | 22.93 |
| KXG27152 | Sorghum | nucleus | 14.61 | 22.35 |
| EES15356 | Sorghum | nucleus | 14.31 | 21.25 |
| EES08860 | Sorghum | nucleus | 14.01 | 21.09 |
| KXG35789 | Sorghum | nucleus | 13.7 | 20.78 |
| EES10898 | Sorghum | nucleus | 13.1 | 20.57 |
| KXG24662 | Sorghum | nucleus | 14.01 | 20.39 |
| EES05289 | Sorghum | plastid | 12.8 | 19.54 |
| KXG36337 | Sorghum | nucleus | 13.55 | 18.87 |
| Solyc06g062680.1.1 | Tomato | cytosol | 14.46 | 18.08 |
| KXG27463 | Sorghum | nucleus | 14.46 | 8.92 |
Protein Annotations
| Gene3D:1.10.1900.10 | MapMan:17.4.2.5 | Gene3D:3.30.70.330 | EntrezGene:8075901 | UniProt:C5YBU9 | EnsemblPlants:EES12460 |
| ProteinID:EES12460 | ProteinID:EES12460.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | InterPro:IPR000504 | InterPro:IPR002004 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:PABP-dom | InterPro:PABP_1234 | InterPro:PABP_HYD | PFAM:PF00076 |
| PFAM:PF00658 | PFscan:PS50102 | PFscan:PS51309 | PANTHER:PTHR24012 | PANTHER:PTHR24012:SF678 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00360 | SMART:SM00361 | SMART:SM00517 | EnsemblPlantsGene:SORBI_3006G139100 |
| SUPFAM:SSF54928 | SUPFAM:SSF63570 | unigene:Sbi.17978 | TIGRFAMs:TIGR01628 | UniParc:UPI0001A876CF | RefSeq:XP_002448132.1 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr6:-:50123934..50130073
Molecular Weight (calculated)
72307.7 Da
IEP (calculated)
9.395
GRAVY (calculated)
-0.337
Length
664 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAQVAAAAA SVAVAVPNGS PGAVPAVVSP GAVGVGVGVA QPLPTTSLYV GDLEGSVSDS QLYELFSQAG QVVSVRVCRD VTSRRSLGYA YVNFSNPLDA
101: ARALEVLNFA VLNNKPIRVM YSNRDPSSRR SGSANIFIKN LDKTIDNKTL HETFSSFGTI LSCKVAMDEA GQSKGFGFVQ YEKEEAAQNA IKSLNGMLIN
201: DKPVFVGPFL RKQERDHSFD KTKFNNVFVK NLSESTTKED LLKVFGEYGS ITSAVVMIGM DGKSRCFGFI NFENPDAASR AVQELNGKKI NDKEWYVGRA
301: QKKSEREMEL KRRFEQSLKD AADKYQGLNL YLKNLDDSIG DDQLRELFSN FGKITSYKVM RDQNGLSKGS GFVAFSTREE ASQALTEMNG KMISGKPLYV
401: AFAQRKEDRK AMLQAQFSQM RPAVPMTPTL APRLPMYPPM APQQLFYGQA PPAMIPPQPG FGFQQQLVPG MRPGGPHMPN YFVPVVQQGQ QGPRPGMRRG
501: AGAQGQQPVP PFQQQIVPRG RMYRYPTGRN MPEAPAMPGV AGGMIQAYDM GGFPVRDAAV SPAAQIGTLT SALANANPEQ QRTILGENLY PLVEQLEPNQ
601: AAKVTGMLLE MDQTEVLHLL ESPDALKSKV AEAMDVLRNV AHQQNPNTPT NQLAALSLTE GIIS
101: ARALEVLNFA VLNNKPIRVM YSNRDPSSRR SGSANIFIKN LDKTIDNKTL HETFSSFGTI LSCKVAMDEA GQSKGFGFVQ YEKEEAAQNA IKSLNGMLIN
201: DKPVFVGPFL RKQERDHSFD KTKFNNVFVK NLSESTTKED LLKVFGEYGS ITSAVVMIGM DGKSRCFGFI NFENPDAASR AVQELNGKKI NDKEWYVGRA
301: QKKSEREMEL KRRFEQSLKD AADKYQGLNL YLKNLDDSIG DDQLRELFSN FGKITSYKVM RDQNGLSKGS GFVAFSTREE ASQALTEMNG KMISGKPLYV
401: AFAQRKEDRK AMLQAQFSQM RPAVPMTPTL APRLPMYPPM APQQLFYGQA PPAMIPPQPG FGFQQQLVPG MRPGGPHMPN YFVPVVQQGQ QGPRPGMRRG
501: AGAQGQQPVP PFQQQIVPRG RMYRYPTGRN MPEAPAMPGV AGGMIQAYDM GGFPVRDAAV SPAAQIGTLT SALANANPEQ QRTILGENLY PLVEQLEPNQ
601: AAKVTGMLLE MDQTEVLHLL ESPDALKSKV AEAMDVLRNV AHQQNPNTPT NQLAALSLTE GIIS
001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
Arabidopsis Description
PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.