CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046487_P001	Maize	cytosol	83.84	82.27
TraesCS3D01G076800.1	Wheat	mitochondrion	23.45	59.44
TraesCS3D01G076700.1	Wheat	mitochondrion	37.4	53.03
TraesCS3A01G076800.1	Wheat	mitochondrion, nucleus, plasma membrane, plastid	45.96	51.97
Os06t0589700-01	Rice	cytosol, extracellular	32.33	51.13
TraesCS3B01G090800.1	Wheat	mitochondrion	48.02	48.48
KXG35258	Sorghum	cytosol	46.43	44.66
EES12460	Sorghum	plastid	45.32	43.07
KXG40160	Sorghum	nucleus	37.56	32.87
EER94133	Sorghum	nucleus	14.1	25.07
EER95718	Sorghum	nucleus	12.52	21.82
OQU91463	Sorghum	nucleus	13.95	21.52
KXG35789	Sorghum	nucleus	14.74	21.23
EES10898	Sorghum	nucleus	13.79	20.57
KXG27152	Sorghum	nucleus	14.1	20.51
EER95414	Sorghum	nucleus	13.15	20.0
EES05289	Sorghum	plastid	13.63	19.77
KXG36337	Sorghum	nucleus	14.58	19.29
EES15356	Sorghum	nucleus	13.31	18.79
KXG24662	Sorghum	nucleus	13.47	18.64
EES08860	Sorghum	nucleus	12.68	18.14
KXG27463	Sorghum	nucleus	13.95	8.18

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	EntrezGene:8079325	UniProt:C5Z568	EnsemblPlants:EER89984
ProteinID:EER89984	ProteinID:EER89984.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	InterPro:IPR000504	InterPro:IPR002004
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076
PFAM:PF00658	PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF620	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SMART:SM00517	EnsemblPlantsGene:SORBI_3010G177200
SUPFAM:SSF54928	SUPFAM:SSF63570	unigene:Sbi.5628	TIGRFAMs:TIGR01628	UniParc:UPI0001A89916	RefSeq:XP_002438617.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:51498384..51501899

Molecular Weight (calculated)

68493.8 Da

IEP (calculated)

8.947

GRAVY (calculated)

-0.290

Length

631 amino acids

Sequence
(BLAST)

001: MASPSTTPRS TIAAAAVPVA EGTPAAAAVL PPLGSISSLY VGDLAESVDE TQLHAVFSQV APLVSVRVCR DIVSGVSLGY GYVNFYSRQE ATCALEALNF
101: APLSGKHIRV MFSNRDPSLR KSGRANLFVK NLEPSIDSKN LYEMFSSFGT ILSCKVATDS AGQSKGYGFV QYETEESAQD AINRLNGMLA NDREMFVGLH
201: MRRRNREVKF TNVYIKNLPT EFSDDDLRQE FAPFGEITSA VVMRDVNGVS KCFGFVNFEK PEFALEAVKK ANGKVINDKT LYVGRAQKKA ERQAELKTKF
301: KQEDRDKKVD KPNGINLYLK NIDDSINDEG LKILFEEFGQ VTSCKVMVDA QGRSKGSGFV LFATAEAGHS AINGMNGRIV GKKPLYVGLA QPKEERRAML
401: MAHFAQRNLA MAASPYAGPQ QVYFGHPAPG QIPPQAAVFG FPQHFVPAMG PVSPVMMPHN MQRSRYPRQR TGGPAAYRQQ QAMIHANANH NIRYMPNARH
501: GAYPAMLPQG FPSAMVSQQH DGSSITTAVA SAEPADQQQI LGNKLYALVE QLEHDHAGKV TGMLLEMDKV KILQLLQSPE VLRAKVREAM DVLQRTKAEG
601: SADPAAAAAT ATAEGSADPA TAADATPTVN A

Best Arabidopsis Sequence Match ( AT1G22760.1 )
(BLAST)

001: MAAAVATGVA PATMVDQVPS PTAQTSVQVP VSIPLPSPVV VADQTHPNSS LYAGDLDPKV TEAHLFDLFK HVANVVSVRV CRDQNRRSLG YAYINFSNPN
101: DAYRAMEALN YTPLFDRPIR IMLSNRDPST RLSGKGNIFI KNLDASIDNK ALFETFSSFG TILSCKVAMD VTGRSKGYGF VQFEKEESAQ AAIDKLNGML
201: MNDKQVFVGH FIRRQERARD ENTPTPRFTN VYVKNLPKEI GEDELRKTFG KFGVISSAVV MRDQSGNSRC FGFVNFECTE AAASAVEKMN GISLGDDVLY
301: VGRAQKKSER EEELRRKFEQ ERINRFEKSQ GANLYLKNLD DSVDDEKLKE MFSEYGNVTS SKVMLNPQGM SRGFGFVAYS NPEEALRALS EMNGKMIGRK
401: PLYIALAQRK EDRRAHLQAL FSQIRAPGPM SGFHHPPGGP MPGPPQHMYV GQNGASMVPS QPIGYGFQPQ FMPGMRPGSG PGNFIVPYPL QRQPQTGPRM
501: GFRRGATNVQ QHIQQQQLMH RNPSPGMRYM NGASNGRNGM DSSVPQGILP PIIPLPIDAS SISHQKAPLL PISKLTSSLA SASPADRTRM LGEQLYPLVE
601: RHEPLHVAKV TGMLLEMDQA EILHLMESPE ALKSKVSEAL DVLRLSVDPT DHDLGFSTTD

Arabidopsis Description

PAB3Polyadenylate-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O64380]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.