CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0449900-01	Rice	plastid	85.82	93.8
TraesCS2B01G335700.1	Wheat	plastid	91.49	92.14
TraesCS2D01G315400.2	Wheat	plastid	91.73	91.51
TraesCS2A01G317700.2	Wheat	plastid	91.25	91.04
Zm00001d025551_P002	Maize	plastid	92.67	86.73
EES05289	Sorghum	plastid	84.16	81.84
HORVU2Hr1G078910.4	Barley	mitochondrion, nucleus	79.43	78.69
GSMUA_Achr10P...	Banana	nucleus	50.59	68.15
GSMUA_Achr6P10190_001	Banana	nucleus	49.88	67.41
KXG35789	Sorghum	nucleus	66.19	63.93
GSMUA_Achr6P09470_001	Banana	nucleus	21.28	61.22
GSMUA_Achr3P01720_001	Banana	mitochondrion	56.03	58.81
Bra027446.1-P	Field mustard	cytosol	44.21	58.44
PGSC0003DMT400020621	Potato	nucleus	54.61	58.33
KRH61258	Soybean	nucleus	54.37	56.23
KRH05723	Soybean	nucleus	54.61	55.93
VIT_18s0001g11080.t01	Wine grape	nucleus	54.37	55.02
KRH51956	Soybean	nucleus	52.72	54.26
KRH15315	Soybean	nucleus	54.37	54.12
Solyc04g079310.2.1	Tomato	nucleus	56.74	53.22
Solyc01g108500.2.1	Tomato	nucleus	49.65	50.85
AT1G47500.1	Thale cress	nucleus	51.77	50.46
CDY52067	Canola	nucleus	49.65	50.12
CDX95176	Canola	nucleus	49.65	50.12
CDY06734	Canola	mitochondrion	35.93	49.84
PGSC0003DMT400066648	Potato	nucleus	49.41	49.76
VIT_03s0063g00850.t01	Wine grape	nucleus	48.46	49.52
Bra018813.1-P	Field mustard	mitochondrion, nucleus	45.39	49.23
AT1G47490.1	Thale cress	nucleus	50.12	49.07
KRH71168	Soybean	nucleus	47.99	47.1
CDY32840	Canola	nucleus	46.81	47.03
CDY16528	Canola	nucleus	47.04	46.93
KRH50251	Soybean	nucleus	47.75	46.87
CDY29341	Canola	nucleus	46.34	46.78
CDY28101	Canola	nucleus	47.28	46.62
Bra040663.1-P	Field mustard	nucleus	40.66	46.24
OQU91463	Sorghum	nucleus	44.68	46.21
CDY50959	Canola	nucleus	46.81	46.05
Solyc10g050860.1.1	Tomato	nucleus	46.34	45.79
CDY68866	Canola	nucleus	44.68	45.54
CDX99265	Canola	nucleus	45.39	45.28
EER95414	Sorghum	nucleus	43.97	44.82
CDX92304	Canola	nucleus	44.92	44.81
Bra022389.1-P	Field mustard	nucleus	44.92	44.6
AT3G19130.1	Thale cress	nucleus	45.86	44.6
CDY22988	Canola	nucleus	43.97	44.29
CDX95462	Canola	nucleus	44.68	43.55
CDY18570	Canola	nucleus	44.44	43.32
KXG27152	Sorghum	nucleus	44.44	43.32
Bra001735.1-P	Field mustard	nucleus	42.08	43.2
CDX82310	Canola	nucleus	42.08	43.2
KXG24662	Sorghum	nucleus	46.57	43.2
AT1G49600.3	Thale cress	nucleus	44.44	41.78
KXG36337	Sorghum	nucleus	45.86	40.67
Bra037538.1-P	Field mustard	nucleus	38.53	40.45
EER95718	Sorghum	nucleus	34.04	39.78
Bra014216.1-P	Field mustard	nucleus	41.61	30.77
EES15356	Sorghum	nucleus	24.35	23.04
EES08860	Sorghum	nucleus	22.7	21.77
EER94133	Sorghum	nucleus	15.37	18.31
EER89984	Sorghum	plastid	20.57	13.79
KXG35258	Sorghum	cytosol	20.33	13.11
EES12460	Sorghum	plastid	20.57	13.1
KXG40160	Sorghum	nucleus	20.8	12.21
KXG27463	Sorghum	nucleus	21.28	8.36

Protein Annotations

MapMan:16.9.4	Gene3D:3.30.70.330	EntrezGene:8057438	UniProt:C5Y9C4	EnsemblPlants:EES10898	ProteinID:EES10898
ProteinID:EES10898.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43955	PANTHER:PTHR43955:SF4
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3006G098500	SUPFAM:SSF54928	unigene:Sbi.15211
UniParc:UPI0001A86DDB	RefSeq:XP_002446570.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:46795404..46801286

Molecular Weight (calculated)

45803.5 Da

IEP (calculated)

8.543

GRAVY (calculated)

-0.620

Length

423 amino acids

Sequence
(BLAST)

001: MQMAATTTDS QAAVPPHHPH AHPHVPPQHG HPHHHMPPQP RWVVIPYPPP PPMVAAPPPP PPQFAKHFAA GPPPPPQAAA GRRTPTPPAA GSGGNGCEEN
101: KTIWVGDLQY WMDENYLHSC FGPSGEVVTI KVIRNRQTGQ SEGYGFVEFF SHASAEKALQ NFTGHVMPNT DRAFKLNWAS YSMGEKRSEV ASDHSIFVGD
201: LAADVTDEML LELFSSKYRS VKGAKVIIDA NTGRSRGYGF VRFGDDNDKS HAMSEMNGVY CSTRPIRIGP ATPRRSSGDS GSSTPGHSDG DSSNRTVYVG
301: GLDPNVSEDE LRKAFAKYGD LASVKIPLGK QCGFVQFASR TDAEEALQGL NGSLIGKQAV RLSWGRSPSH KQSRGDSGNR RNNMYYGTPF YGGYGYASPV
401: PHPNMYAAAY GAYPMYGNQQ LVS

Best Arabidopsis Sequence Match ( AT1G47500.1 )
(BLAST)

001: MADVKVQSES ESSDSHPLVD YQSLPPYPPP HPPVEVEENQ PKTSPTPPPP HWMRYPPVLM PQMMYAPPPP MPFSPYHQYP NHHHFHHQSR GNKHQNAFNG
101: ENKTIWVGDL QNWMDEAYLN SAFTSAEERE IVSLKVIRNK HNGSSEGYGF VEFESHDVAD KVLQEFNGAP MPNTDQPFRL NWASFSTGEK RLENNGPDLS
201: IFVGDLAPDV SDALLHETFS EKYPSVKAAK VVLDANTGRS KGYGFVRFGD ENERTKAMTE MNGVKCSSRA MRIGPATPRK TNGYQQQGGY MPSGAFTRSE
301: GDTINTTIFV GGLDSSVTDE DLKQPFSEFG EIVSVKIPVG KGCGFVQFVN RPNAEEALEK LNGTVIGKQT VRLSWGRNPA NKQPRDKYGN QWVDPYYGGQ
401: FYNGYGYMVP QPDPRMYPAA PYYPMYGGHQ QQVS

Arabidopsis Description

RBP47C'Polyadenylate-binding protein RBP47C' [Source:UniProtKB/Swiss-Prot;Acc:Q9SX80]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.