Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P15210_001 | Banana | nucleus | 56.72 | 55.45 |
| GSMUA_Achr3P06840_001 | Banana | nucleus | 55.41 | 54.17 |
| GSMUA_Achr6P10190_001 | Banana | nucleus | 53.11 | 51.76 |
| GSMUA_Achr10P... | Banana | nucleus | 53.11 | 51.59 |
| TraesCS5A01G243500.1 | Wheat | nucleus | 56.72 | 50.58 |
| TraesCS5B01G241400.1 | Wheat | nucleus | 56.39 | 50.29 |
| TraesCS5D01G250100.1 | Wheat | nucleus | 56.07 | 50.0 |
| AT1G47500.1 | Thale cress | nucleus | 70.82 | 49.77 |
| AT1G47490.1 | Thale cress | nucleus | 70.49 | 49.77 |
| Os02t0567900-01 | Rice | cytosol, nucleus | 41.97 | 49.42 |
| KRH61258 | Soybean | nucleus | 63.28 | 47.19 |
| PGSC0003DMT400020621 | Potato | nucleus | 60.98 | 46.97 |
| VIT_18s0001g11080.t01 | Wine grape | nucleus | 63.61 | 46.41 |
| KRH51956 | Soybean | nucleus | 61.31 | 45.5 |
| KRH05723 | Soybean | nucleus | 61.31 | 45.28 |
| CDY52067 | Canola | nucleus | 61.64 | 44.87 |
| CDX95176 | Canola | nucleus | 61.31 | 44.63 |
| KRH15315 | Soybean | nucleus | 61.31 | 44.0 |
| Solyc04g079310.2.1 | Tomato | nucleus | 61.31 | 41.46 |
| TraesCS6A01G204400.1 | Wheat | mitochondrion | 50.16 | 40.37 |
| Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 56.07 | 40.33 |
| Os04t0449900-01 | Rice | plastid | 50.49 | 39.79 |
| Zm00001d020748_P002 | Maize | plasma membrane | 56.39 | 39.72 |
| HORVU5Hr1G069180.3 | Barley | nucleus, peroxisome, plastid | 56.07 | 39.49 |
| KXG35789 | Sorghum | nucleus | 56.07 | 39.04 |
| GSMUA_Achr3P01720_001 | Banana | mitochondrion | 51.48 | 38.96 |
| Os09t0462700-01 | Rice | mitochondrion, nucleus, plastid | 56.07 | 38.78 |
| CDY68866 | Canola | nucleus | 52.46 | 38.55 |
| CDY29341 | Canola | nucleus | 52.79 | 38.42 |
| CDY32840 | Canola | nucleus | 52.13 | 37.77 |
| CDY16528 | Canola | nucleus | 52.13 | 37.5 |
| CDY50959 | Canola | nucleus | 51.8 | 36.74 |
| CDY28101 | Canola | nucleus | 51.48 | 36.6 |
| HORVU6Hr1G048390.1 | Barley | cytoskeleton, nucleus, peroxisome | 49.84 | 36.45 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 49.84 | 36.45 |
| CDX82310 | Canola | nucleus | 49.18 | 36.41 |
| TraesCS2A01G317700.2 | Wheat | plastid | 50.49 | 36.32 |
| TraesCS2D01G315400.2 | Wheat | plastid | 50.49 | 36.32 |
| HORVU2Hr1G078910.4 | Barley | mitochondrion, nucleus | 50.82 | 36.3 |
| CDY22988 | Canola | nucleus | 49.84 | 36.19 |
| CDX92304 | Canola | nucleus | 50.16 | 36.08 |
| TraesCS2B01G335700.1 | Wheat | plastid | 49.51 | 35.95 |
| EES10898 | Sorghum | nucleus | 49.84 | 35.93 |
| CDY34835 | Canola | nucleus | 46.23 | 35.88 |
| CDX99265 | Canola | nucleus | 49.84 | 35.85 |
| CDX89287 | Canola | nucleus | 48.52 | 35.75 |
| CDY46671 | Canola | nucleus | 49.84 | 35.43 |
| CDY18570 | Canola | nucleus | 50.16 | 35.25 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 49.18 | 35.21 |
| EES05289 | Sorghum | plastid | 50.16 | 35.17 |
| Zm00001d050838_P001 | Maize | plastid | 49.51 | 35.12 |
| CDY17286 | Canola | nucleus | 46.56 | 35.06 |
| CDX95462 | Canola | nucleus | 49.84 | 35.02 |
| CDY14290 | Canola | nucleus | 47.87 | 35.01 |
| CDY66423 | Canola | nucleus | 48.2 | 34.51 |
| CDY29263 | Canola | nucleus | 46.89 | 34.13 |
| TraesCS6B01G228100.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 50.49 | 33.77 |
| CDY13992 | Canola | nucleus | 46.23 | 33.65 |
| CDY19874 | Canola | nucleus | 46.23 | 33.65 |
| Zm00001d025551_P002 | Maize | plastid | 49.18 | 33.19 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 46.23 | 32.79 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 46.23 | 32.79 |
| CDX92537 | Canola | nucleus | 44.92 | 32.7 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 49.18 | 31.65 |
| GSMUA_Achr6P09470_001 | Banana | nucleus | 14.75 | 30.61 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 46.56 | 28.01 |
| CDY63384 | Canola | mitochondrion, nucleus | 24.92 | 18.18 |
| CDY33092 | Canola | nucleus | 24.59 | 17.65 |
| CDY51403 | Canola | nucleus | 24.26 | 17.62 |
| CDY61476 | Canola | nucleus | 23.61 | 17.18 |
| CDY02486 | Canola | nucleus | 23.61 | 17.14 |
| CDY72408 | Canola | plastid | 4.92 | 16.13 |
| CDY67365 | Canola | plastid | 13.77 | 14.38 |
| CDX79296 | Canola | plastid | 8.52 | 14.21 |
| CDY59539 | Canola | nucleus | 17.05 | 14.21 |
| CDX81822 | Canola | mitochondrion, nucleus | 25.25 | 14.13 |
| CDY57754 | Canola | nucleus | 9.84 | 14.08 |
| CDX69025 | Canola | nucleus, plastid | 28.2 | 14.08 |
| CDX75397 | Canola | nucleus, plastid | 27.87 | 13.8 |
| CDY43894 | Canola | nucleus | 16.39 | 13.74 |
| CDY66740 | Canola | nucleus | 17.05 | 13.65 |
| CDY67617 | Canola | nucleus | 17.05 | 13.65 |
| CDY62723 | Canola | cytosol | 26.89 | 13.29 |
| CDY51957 | Canola | cytosol, plastid | 26.89 | 13.25 |
| CDY38939 | Canola | nucleus | 26.89 | 12.73 |
| CDX89562 | Canola | nucleus | 26.89 | 12.71 |
| CDX89664 | Canola | cytosol | 24.92 | 12.38 |
| CDX71223 | Canola | cytosol | 25.57 | 12.23 |
| CDY67921 | Canola | nucleus | 25.57 | 12.09 |
| CDY56198 | Canola | cytosol | 19.02 | 11.86 |
| CDY51045 | Canola | cytosol | 24.92 | 11.64 |
| CDY54068 | Canola | cytosol | 24.92 | 11.64 |
| CDY46079 | Canola | nucleus | 23.93 | 11.61 |
| CDY36634 | Canola | nucleus | 24.59 | 11.56 |
| CDY41472 | Canola | cytosol, plastid | 23.93 | 11.39 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 23.93 | 11.27 |
| CDY37935 | Canola | nucleus | 23.93 | 11.21 |
| CDY36684 | Canola | plastid | 24.26 | 11.13 |
| CDX72826 | Canola | plastid | 24.92 | 11.11 |
| CDX96344 | Canola | plastid | 24.92 | 11.11 |
| CDY03685 | Canola | nucleus | 23.28 | 11.04 |
| CDY30168 | Canola | cytosol | 19.34 | 10.97 |
| CDY33264 | Canola | mitochondrion, nucleus | 6.89 | 10.5 |
| CDY67364 | Canola | nucleus | 9.18 | 9.56 |
| CDX92325 | Canola | nucleus | 9.18 | 8.7 |
| CDY37229 | Canola | cytosol | 4.59 | 6.57 |
| CDX91689 | Canola | nucleus | 6.56 | 6.56 |
| CDY08990 | Canola | cytosol | 0.98 | 3.03 |
| CDX79295 | Canola | cytosol, plastid | 0.98 | 3.0 |
Protein Annotations
| EnsemblPlants:CDY06734 | EnsemblPlantsGene:GSBRNA2T00122936001 | Gene3D:3.30.70.330 | GO:A0A078F1K0 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR43955 | PANTHER:PTHR43955:SF5 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDY06734 | ProteinID:CDY06734.1 |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EEA7B7 | MapMan:16.9.4 | : | : |
Description
BnaA10g05130D
Coordinates
chrLK031972:-:693789..695345
Molecular Weight (calculated)
34176.7 Da
IEP (calculated)
9.484
GRAVY (calculated)
-0.381
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKHVLIQMV SIKVIRNKHT GLSEGYGFVE FLSHDIADKV LKKFNGTYMP NTDMPFRLNW ATGEENDHEL SIFVGGLAPD VSDSLLYNTF SEIYPSVKAA
101: TVVIDAYTGI SKGFGFVRFG DVNERIKAMT KMHGVKCSNR AMLIGPATPR ETRSFRQQGM YMKNDAISYP ARDATIFVGG LDSSVTSEDL KQPFSAYGEI
201: VSVNIPLGKE CGFVQFVNRQ NAEEALKKLN GTVIRNRRVR LAWGQNKLPR YNYGNQWFGA YFGGQHYNGY GYMVPQPHDP RVYAVAPYGG YPVYSDPQQQ
301: VSRGN
101: TVVIDAYTGI SKGFGFVRFG DVNERIKAMT KMHGVKCSNR AMLIGPATPR ETRSFRQQGM YMKNDAISYP ARDATIFVGG LDSSVTSEDL KQPFSAYGEI
201: VSVNIPLGKE CGFVQFVNRQ NAEEALKKLN GTVIRNRRVR LAWGQNKLPR YNYGNQWFGA YFGGQHYNGY GYMVPQPHDP RVYAVAPYGG YPVYSDPQQQ
301: VSRGN
001: MADVKIQSES ESSDSHPVVD NQPPPPPPPP QQPAKEEENQ PKTSPTPPPH WMRYPPTVII PHQMMYAPPP FPPYHQYPNH HHLHHQSRGN KHQNAFNGEN
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS
Arabidopsis Description
RBP47CPolyadenylate-binding protein RBP47C [Source:UniProtKB/Swiss-Prot;Acc:Q9SX79]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.