CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79791
CDY01209
CDY01210
CDY12749
CDY17896

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34110.1	CDX79791	AT2G43970.1	21798944
AT4G34110.1	CDY17896	AT2G43970.1	21798944
AT4G34110.1	CDY01209	AT4G14270.1	21798944
AT4G34110.1	CDY01210	AT4G14270.1	21798944
AT4G34110.1	CDY12749	AT4G14270.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75397	Canola	nucleus, plastid	97.05	96.27
CDX79295	Canola	cytosol, plastid	15.71	96.0
CDY62723	Canola	cytosol	90.18	89.3
CDY51957	Canola	cytosol, plastid	90.02	88.85
CDY08990	Canola	cytosol	14.08	86.87
CDX79296	Canola	plastid	25.86	86.34
AT4G34110.1	Thale cress	cytosol	87.89	85.37
CDX89664	Canola	cytosol	80.69	80.29
CDX71223	Canola	cytosol	82.49	79.0
CDY67365	Canola	plastid	37.64	78.77
CDY67364	Canola	nucleus	36.82	76.79
CDY36634	Canola	nucleus	80.69	75.96
KRH70673	Soybean	nucleus	74.63	70.37
KRH50336	Soybean	cytosol	74.47	69.89
CDY54068	Canola	cytosol	72.83	68.15
CDY51045	Canola	cytosol	72.67	67.99
PGSC0003DMT400066245	Potato	extracellular	70.87	67.34
Solyc01g107870.2.1	Tomato	extracellular	70.87	67.34
CDY37229	Canola	cytosol	23.08	66.2
HORVU2Hr1G087390.3	Barley	cytosol, mitochondrion, nucleus	63.34	63.34
GSMUA_Achr9P00990_001	Banana	cytosol	66.12	62.06
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	65.63	61.5
TraesCS7D01G287900.1	Wheat	cytosol	63.99	61.29
TraesCS2A01G359000.1	Wheat	cytosol	66.61	61.2
GSMUA_Achr4P09890_001	Banana	cytosol	65.3	61.2
TraesCS2D01G358000.1	Wheat	cytosol	66.45	61.14
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	65.96	61.06
TraesCS2B01G378400.1	Wheat	nucleus	66.28	60.9
GSMUA_AchrUn_...	Banana	cytosol	64.98	60.89
Os09t0115400-01	Rice	nucleus	65.96	60.88
Zm00001d025801_P005	Maize	cytosol, plastid	64.81	60.74
TraesCS5B01G159400.1	Wheat	cytosol	64.65	60.68
Os04t0504800-01	Rice	plasma membrane	65.3	60.55
TraesCS5A01G161800.2	Wheat	nucleus	64.48	60.52
TraesCS5D01G167000.1	Wheat	nucleus, unclear	64.48	60.52
EES12460	Sorghum	plastid	65.63	60.39
CDX89562	Canola	nucleus	63.34	60.0
TraesCS7A01G288700.1	Wheat	nucleus	64.98	59.97
KXG35258	Sorghum	cytosol	64.32	59.91
CDY46079	Canola	nucleus	61.54	59.78
Zm00001d019824_P004	Maize	cytosol	63.99	59.6
CDY38939	Canola	nucleus	62.68	59.47
GSMUA_Achr4P20270_001	Banana	cytosol	62.52	59.41
Zm00001d005276_P007	Maize	cytosol	63.5	59.33
CDY67921	Canola	nucleus	61.21	57.98
HORVU5Hr1G050560.1	Barley	plastid	64.65	56.27
HORVU7Hr1G063970.1	Barley	cytosol, nucleus, plastid	64.98	55.45
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	70.54	54.76
TraesCS7B01G182800.3	Wheat	cytosol	60.39	54.67
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	53.52	50.46
CDY72408	Canola	plastid	7.53	49.46
CDY41472	Canola	cytosol, plastid	50.74	48.36
CDY37935	Canola	nucleus	50.25	47.16
CDY03685	Canola	nucleus	49.26	46.81
CDX68303	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	49.59	46.76
CDX72826	Canola	plastid	51.88	46.34
CDX96344	Canola	plastid	51.88	46.34
CDY36684	Canola	plastid	49.59	45.56
GSMUA_Achr7P05430_001	Banana	nucleus	66.45	44.91
CDX92325	Canola	nucleus	22.91	43.48
CDY33264	Canola	mitochondrion, nucleus	12.93	39.5
CDY57754	Canola	nucleus	13.75	39.44
CDY30168	Canola	cytosol	31.42	35.69
CDY56198	Canola	cytosol	27.99	34.97
CDX91689	Canola	nucleus	16.69	33.44
CDY06734	Canola	mitochondrion	14.08	28.2
CDY59539	Canola	nucleus	16.2	27.05
CDY66740	Canola	nucleus	16.69	26.77
CDY67617	Canola	nucleus	16.69	26.77
CDY43894	Canola	nucleus	15.88	26.65
CDY13992	Canola	nucleus	18.0	26.25
CDX92537	Canola	nucleus	17.51	25.54
CDY34835	Canola	nucleus	16.37	25.45
CDX70874	Canola	cytosol, nucleus, peroxisome	17.84	25.35
CDY17286	Canola	nucleus	16.53	24.94
CDX88893	Canola	cytosol, nucleus, peroxisome	17.51	24.88
CDX89287	Canola	nucleus	16.53	24.4
CDY19874	Canola	nucleus	16.53	24.11
CDY29263	Canola	nucleus	16.37	23.87
CDY14290	Canola	nucleus	16.2	23.74
CDX92786	Canola	mitochondrion, nucleus, peroxisome	16.53	23.71
CDX95176	Canola	nucleus	16.2	23.63
CDY46671	Canola	nucleus	16.53	23.54
CDY61476	Canola	nucleus	16.04	23.39
CDY02486	Canola	nucleus	16.04	23.33
CDY63384	Canola	mitochondrion, nucleus	15.88	23.21
CDY52067	Canola	nucleus	15.88	23.15
CDY51403	Canola	nucleus	15.71	22.86
CDY33092	Canola	nucleus	15.88	22.82
CDY66423	Canola	nucleus	15.88	22.77
CDY68866	Canola	nucleus	15.38	22.65
CDY29341	Canola	nucleus	15.22	22.2
CDY16528	Canola	nucleus	15.22	21.93
CDY22988	Canola	nucleus	15.06	21.9
CDY32840	Canola	nucleus	15.06	21.85
CDX95462	Canola	nucleus	15.38	21.66
CDY18570	Canola	nucleus	15.38	21.66
CDY50959	Canola	nucleus	15.22	21.63
CDX82310	Canola	nucleus	14.57	21.6
CDX99265	Canola	nucleus	14.89	21.46
CDY28101	Canola	nucleus	15.06	21.45
CDX92304	Canola	nucleus	14.57	20.99
CDY34639	Canola	nucleus, plastid, vacuole	16.53	19.92
CDX81822	Canola	mitochondrion, nucleus	16.37	18.35

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	GO:A0A078BW57	EnsemblPlants:CDX69025	ProteinID:CDX69025
ProteinID:CDX69025.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	EnsemblPlantsGene:GSBRNA2T00130780001	InterPro:Hud_Sxl_RNA	InterPro:IPR000504
InterPro:IPR002004	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD
PFAM:PF00076	PFAM:PF00658	PRINTS:PR00961	PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012
PANTHER:PTHR24012:SF349	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361
SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI0004EBD68E	SEG:seg

Description

BnaC01g04280D

Coordinates

chrLK031789:+:2509344..2517844

Molecular Weight (calculated)

67038.5 Da

IEP (calculated)

6.735

GRAVY (calculated)

-0.514

Length

611 amino acids

Sequence
(BLAST)

001: MAQVQTTVAP AAQFGTTSLY VGDLDLNVTD SQLFEAFSQM GQVVSVRVCR DSATRRSLGY GYVNFTNPPD AARAIQELNY IPLYGKPIRV MYSHRDPSVR
101: RSGAGNIFIK NLDQSIDHKA LHDTFSTFGN IVSCKVAVDA SGQSKGYGFV QYADEESAQK AIEKLNGMLL NDKQVYVGPF LRRQERDSTA NKTKFTNVYV
201: KNLAESTTDD DLKSAFAEYG EITSAVVMKD GEGGKSKGFG FVNFENADDA AKAVESLNGK MFDDKEWYVG RAQKKSERET ELRVRREESL REAAERFQSS
301: NLYVKNLDSS VSDEKLKEMF SPFGTVTSCK VMRDPSGISK GSGFVAFSTP EEATEAMSQL SGKMVEGKPL YVAIAQRKED RSVRLQAQFS QVRPVAMPPS
401: AGPRMPTFPP GGPGIGQQMF YGQAPPNMIP PQPGYGYQQQ LVPGMRPGGR GHVPNYFMPM VQQQQQQQRP GGIQQSQHQV PMMQHQMHPR GRMLRYSQGR
501: GSGGDVAPYD MGNNNNNITM PIGALASNLA NASPEQQRTM LGENLYPLVE QLEADSAAKV TGMLLEMDQT EVLHLLESPE ALKDKVAEAM DVLRSVAAGG
601: AAEQLASLNL S

Best Arabidopsis Sequence Match ( AT4G34110.1 )
(BLAST)

001: MAQVQLQGQT PNGSTAAVTS APATSGGATA TQFGNTSLYV GDLDFNVTDS QLFDAFGQMG TVVTVRVCRD LVTRRSLGYG YVNFTNPQDA ARAIQELNYI
101: PLYGKPIRVM YSHRDPSVRR SGAGNIFIKN LDESIDHKAL HDTFSSFGNI VSCKVAVDSS GQSKGYGFVQ YANEESAQKA IEKLNGMLLN DKQVYVGPFL
201: RRQERDSTAN KTKFTNVYVK NLAESTTDDD LKNAFGEYGK ITSAVVMKDG EGKSKGFGFV NFENADDAAR AVESLNGHKF DDKEWYVGRA QKKSERETEL
301: RVRYEQNLKE AADKFQSSNL YVKNLDPSIS DEKLKEIFSP FGTVTSSKVM RDPNGTSKGS GFVAFATPEE ATEAMSQLSG KMIESKPLYV AIAQRKEDRR
401: VRLQAQFSQV RPVAMQPSVG PRMPVYPPGG PGIGQQMFYG QAPPAMIPPQ PGYGYQQQLV PGMRPGGGPV PSFFMPMVQP QQQRPGGGRR PGGIQHSQQQ
501: NPMMQQQMHP RGRMFRYPQG RGGSGDVPPY DMGNNMPLTI GALASNLSNA TPEQQRTMLG EVLYPLVEQV EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAT EQLASLNLS

Arabidopsis Description

PAB2Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A178UWB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.