CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY51045
CDY54068

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43970.1	CDY51045	AT1G49760.1	21798944
AT2G43970.1	CDY54068	AT1G49760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17896	Canola	nucleus	72.0	79.47
Bra004795.1-P	Field mustard	nucleus	76.0	76.77
AT2G43970.1	Thale cress	nucleus	61.2	56.15
VIT_09s0002g07980.t01	Wine grape	cytosol	7.2	52.94
Os11t0248200-01	Rice	nucleus, plasma membrane	35.2	49.72
KRH69036	Soybean	nucleus	46.6	48.95
KRG97304	Soybean	nucleus	45.8	48.93
GSMUA_Achr3P19230_001	Banana	nucleus	41.4	45.49
GSMUA_Achr6P18240_001	Banana	nucleus	40.2	43.79
TraesCS7A01G265700.1	Wheat	nucleus	34.4	43.77
TraesCS7D01G269000.1	Wheat	nucleus	34.2	43.51
TraesCS7B01G166700.1	Wheat	nucleus	34.0	43.26
TraesCS5B01G121000.2	Wheat	nucleus	40.0	43.1
TraesCS5D01G126900.3	Wheat	nucleus	40.0	43.01
TraesCS4D01G084200.1	Wheat	nucleus	41.4	42.95
Zm00001d007279_P001	Maize	nucleus	40.0	42.55
Solyc08g015650.2.1	Tomato	nucleus	38.8	42.54
HORVU7Hr1G056460.1	Barley	nucleus	33.0	42.31
HORVU5Hr1G029110.1	Barley	nucleus	39.0	42.21
EES08246	Sorghum	nucleus	40.6	42.2
TraesCS5A01G115200.1	Wheat	nucleus	38.6	41.51
Os08t0542900-01	Rice	nucleus	35.4	41.45
TraesCS4B01G087000.1	Wheat	nucleus	39.8	41.29
EES15258	Sorghum	nucleus	36.0	41.19
HORVU4Hr1G014800.1	Barley	nucleus	39.6	40.99
TraesCS4A01G229400.1	Wheat	nucleus	39.6	40.99
PGSC0003DMT400064931	Potato	nucleus	38.0	40.86
Solyc12g019000.1.1	Tomato	nucleus	38.4	40.59
Os12t0225100-01	Rice	nucleus	19.2	39.51
EES16897	Sorghum	nucleus	38.4	39.26
GSMUA_Achr2P11420_001	Banana	mitochondrion	38.6	39.15
Zm00001d031707_P001	Maize	nucleus	33.4	38.84
Solyc12g096640.1.1	Tomato	nucleus, plastid	37.8	36.84
PGSC0003DMT400075259	Potato	nucleus	36.4	35.14
CDX82312	Canola	nucleus	29.6	34.34
CDY22991	Canola	nucleus	29.2	33.87
CDX99268	Canola	nucleus	28.8	32.43
CDX92302	Canola	nucleus	28.4	32.05
Zm00001d023987_P001	Maize	nucleus	31.2	31.84
CDY68074	Canola	nucleus	22.8	29.23
CDY33465	Canola	nucleus	22.0	28.13
CDY35155	Canola	nucleus	21.4	27.37
CDY03229	Canola	nucleus	21.2	27.25
Zm00001d020113_P001	Maize	cytosol	20.4	25.63

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	GO:A0A078CRK7	EnsemblPlants:CDX79791	ProteinID:CDX79791
ProteinID:CDX79791.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:1990904	EnsemblPlantsGene:GSBRNA2T00132619001	InterPro:IPR000504	InterPro:IPR006630
InterPro:IPR012677	InterPro:IPR036388	InterPro:La_HTH	InterPro:La_like_plant_RRM	InterPro:Lupus_La	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF05383	PRINTS:PR00302	PFscan:PS50102	PFscan:PS50961	PANTHER:PTHR22792	PANTHER:PTHR22792:SF52
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00715	SUPFAM:SSF46785	SUPFAM:SSF54928	UniParc:UPI0004EE1C70
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

BnaA05g03650D

Coordinates

chrLK031819:+:171038..174284

Molecular Weight (calculated)

55799.3 Da

IEP (calculated)

8.778

GRAVY (calculated)

-1.007

Length

500 amino acids

Sequence
(BLAST)

001: MADQQTLDSD DLSHSTSSDP SLLRSLSSSR LNAGAPEFVP GRTTPPPLPQ RMIIPPPPPH GMLHMYHHQR PFNVPVLGPV PIQPHHHPHR FHHNRPQNQH
101: YVPVRSHQQE PDSVVKKRDH KRESKNNDQT NEAGASSVVI DPKTGLPEDT IQKIVNQVEY YFSDLNLATT DHLMRFISKD PEGYVPIQVV ASFKKVKAVV
201: SGNSQLATVL QNSTKLVVSE DGKKVRRMNP VTEAALEELQ SRIVIAENLP EDHCYQNLMK IFSTVGSVKN IRTCQPQITG NAVPPAARSA KSDGNLFSNK
301: VHAFVEYETV ELAEKAVAEL NEAGNWRSSL KVRLMLKPQT KEPKQGQGRG RKGHDVEVEH EEDEATASEQ QQQQPIEKLS EECSGEWDTH VPEQAVIGEE
401: QGNEKAAGQR KGRSRGRGKG RGRGQPHQNQ NQNHNHNHNG RGNHHNHNHH HQHQVGTPPS NNQMNSMEQQ PKQQPPGPRM PDGTRGFSMG RGKPITVQAD

Best Arabidopsis Sequence Match ( AT2G43970.1 )
(BLAST)

001: MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA
401: DVEHEEDDAT TSEQQPIEKQ SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ NHNHNGRGNH HHHHHHQVGT
501: QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV MVQAE

Arabidopsis Description

LARP6BLa-related protein 6B [Source:UniProtKB/Swiss-Prot;Acc:O80567]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.