Factsheet for Solyc08g015650.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g107870.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43970.1	Solyc01g107870.2.1	AT1G49760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064931	Potato	nucleus	76.97	75.48
VIT_05s0094g01400.t01	Wine grape	mitochondrion	38.6	54.15
Solyc12g019000.1.1	Tomato	nucleus	53.95	52.01
VIT_09s0002g07980.t01	Wine grape	cytosol	7.46	50.0
Os11t0248200-01	Rice	nucleus, plasma membrane	36.4	46.89
KRG97304	Soybean	nucleus	44.74	43.59
TraesCS7B01G166700.1	Wheat	nucleus	37.06	43.0
TraesCS7D01G269000.1	Wheat	nucleus	36.84	42.75
CDY17896	Canola	nucleus	42.32	42.6
KRH69036	Soybean	nucleus	44.08	42.23
TraesCS7A01G265700.1	Wheat	nucleus	36.18	41.98
GSMUA_Achr3P19230_001	Banana	nucleus	41.89	41.98
Solyc12g096640.1.1	Tomato	nucleus, plastid	46.27	41.13
Bra004795.1-P	Field mustard	nucleus	43.42	40.0
HORVU7Hr1G056460.1	Barley	nucleus	33.77	39.49
GSMUA_Achr6P18240_001	Banana	nucleus	39.47	39.22
CDX79791	Canola	nucleus	42.54	38.8
TraesCS4D01G084200.1	Wheat	nucleus	41.01	38.8
TraesCS5D01G126900.3	Wheat	nucleus	39.47	38.71
Os08t0542900-01	Rice	nucleus	35.96	38.41
TraesCS5B01G121000.2	Wheat	nucleus	39.04	38.36
TraesCS4A01G229400.1	Wheat	nucleus	40.57	38.3
TraesCS4B01G087000.1	Wheat	nucleus	40.35	38.17
HORVU4Hr1G014800.1	Barley	nucleus	40.13	37.89
TraesCS5A01G115200.1	Wheat	nucleus	38.6	37.85
HORVU5Hr1G029110.1	Barley	nucleus	38.16	37.66
Zm00001d007279_P001	Maize	nucleus	38.6	37.45
EES08246	Sorghum	nucleus	39.47	37.42
GSMUA_Achr2P11420_001	Banana	mitochondrion	39.25	36.31
Zm00001d031707_P001	Maize	nucleus	33.99	36.05
Os12t0225100-01	Rice	nucleus	19.08	35.8
AT2G43970.1	Thale cress	nucleus	42.76	35.78
EES15258	Sorghum	nucleus	33.99	35.47
Solyc01g108310.2.1	Tomato	nucleus	31.14	35.32
Solyc02g070550.2.1	Tomato	nucleus	28.73	35.03
EES16897	Sorghum	nucleus	37.06	34.56
Solyc10g050550.1.1	Tomato	nucleus	29.82	33.01
Zm00001d023987_P001	Maize	nucleus	30.7	28.57
Zm00001d020113_P001	Maize	cytosol	21.49	24.62

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030529	GO:GO:1990904
InterPro:IPR000504	InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388	UniProt:K4CJ95	InterPro:La_HTH
InterPro:La_like_plant_RRM	InterPro:Lupus_La	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF05383	PRINTS:PR00302	PFscan:PS50102
PFscan:PS50961	PANTHER:PTHR22792	PANTHER:PTHR22792:SF52	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00715
SUPFAM:SSF46785	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc08g015650.2	EnsemblPlants:Solyc08g015650.2.1	UniParc:UPI000276B4A5	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:+:5196480..5201030

Molecular Weight (calculated)

49212.9 Da

IEP (calculated)

9.010

GRAVY (calculated)

-0.599

Length

456 amino acids

Sequence
(BLAST)

001: MAMEESAIAV DLLTDSSATS LPSDHTDSCS SPSDLPSPTA TRLNALAPAF VPRSISPTPS LNDLNQADFH PLPNHYVYAP QLQVQYPSPY YGGGGGGVAD
101: VDHASASKRG GLTDEAAQKI VNQVEFYFSD LNLATTDHLI KHMLKDQEGY VPISVVALFK KIKALIRNHA QLAQVLRSST KLVVSEDGMK VKRKIPLAET
201: DLKELQSRIV IAENLPEDHC HQNLMKIFSA VGSVKMIRTC LPQSSNGGAS SGSRTAKSDS TLHSNKLHAF VEYETAELAE RAAVELNDDN WRNALEVRLL
301: LRSSEKSGQA QGKKAGHDSE NFKGDDGSAL EVNEKLNEES RHHIDAKSNE LAEEHGSDGQ RRGRGQGRGR GKGQGQRRGR PQSHQNNRGG HLGAPLSNVN
401: RGSNVRNSLS NIIRVGVGKP VLEQSAAAKQ SSVPRMPDGT KGFSMGRGKS TPIITM

Best Arabidopsis Sequence Match ( AT2G43970.1 )
(BLAST)

001: MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA
401: DVEHEEDDAT TSEQQPIEKQ SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ NHNHNGRGNH HHHHHHQVGT
501: QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV MVQAE

Arabidopsis Description

LARP6BLa-related protein 6B [Source:UniProtKB/Swiss-Prot;Acc:O80567]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.