Factsheet for Os11t0248200-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plasma membrane
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
YLoc:	nucleus

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os04t0504800-01
Os08t0314800-02
Os09t0115400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43970.1	Os04t0504800-01	AT1G49760.1	21798944
AT2G43970.1	Os08t0314800-02	AT1G49760.1	21798944
AT2G43970.1	Os09t0115400-01	AT1G49760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0225100-01	Rice	nucleus	40.4	58.85
TraesCS4D01G084200.1	Wheat	nucleus	75.14	55.19
TraesCS4B01G087000.1	Wheat	nucleus	73.73	54.15
EES08246	Sorghum	nucleus	73.45	54.05
Zm00001d007279_P001	Maize	nucleus	71.75	54.04
VIT_05s0094g01400.t01	Wine grape	mitochondrion	48.31	52.62
HORVU4Hr1G014800.1	Barley	nucleus	70.34	51.55
VIT_09s0002g07980.t01	Wine grape	cytosol	9.89	51.47
TraesCS4A01G229400.1	Wheat	nucleus	69.49	50.93
GSMUA_Achr3P19230_001	Banana	nucleus	57.63	44.84
GSMUA_Achr6P18240_001	Banana	nucleus	55.37	42.7
GSMUA_Achr2P11420_001	Banana	mitochondrion	53.95	38.74
Os08t0542900-01	Rice	nucleus	46.05	38.17
CDY17896	Canola	nucleus	48.31	37.75
KRH69036	Soybean	nucleus	49.15	36.55
Solyc08g015650.2.1	Tomato	nucleus	46.89	36.4
KRG97304	Soybean	nucleus	48.02	36.32
Bra004795.1-P	Field mustard	nucleus	49.72	35.56
CDX79791	Canola	nucleus	49.72	35.2
PGSC0003DMT400064931	Potato	nucleus	45.76	34.84
Solyc12g019000.1.1	Tomato	nucleus	45.76	34.25
AT2G43970.1	Thale cress	nucleus	50.28	32.66
PGSC0003DMT400075259	Potato	nucleus	44.35	30.31
Os07t0102500-01	Rice	nucleus	36.72	29.68
Solyc12g096640.1.1	Tomato	nucleus, plastid	42.94	29.63
Os03t0566500-01	Rice	nucleus, plastid	35.03	28.9

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	ProteinID:BAF27980.1	ProteinID:BAT13432.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
InterPro:IPR000504	InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388	InterPro:La_HTH	InterPro:La_like_plant_RRM
InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os11g0248200	EnsemblPlants:Os11t0248200-01	PFAM:PF00076	PFAM:PF05383	PFscan:PS50102
PFscan:PS50961	PANTHER:PTHR22792	PANTHER:PTHR22792:SF81	UniProt:Q0ITJ6	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00715	SUPFAM:SSF46785	SUPFAM:SSF54928	UniParc:UPI0000DD9BB2	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

Nucleotide-binding, alpha-beta plait domain containing protein. (Os11t0248200-01)

Coordinates

chr11:-:8018430..8024735

Molecular Weight (calculated)

38753.0 Da

IEP (calculated)

9.037

GRAVY (calculated)

-1.025

Length

354 amino acids

Sequence
(BLAST)

001: YFSDINLATT EHLMRFITKD PEGYVPISVV AGFKKIKALI QSNAMLASAL RTSSKLVVSN DGTRVKREQP FTESDLEELQ ARIVVAENLP DDHCYQNLMK
101: LFSTVGSVKT IRTCYPQTPN GTGPVTNRSA KLDMLFANKL HAFVEYDTVE DAEKAIVELN DERNWRNGLR VRLLNTCMTK GGKGKKGGHD INDGHGVEDD
201: VSTSNQSNEK HGEEALQTPD AQGEQLPDES AGDMGRGRGK GRGRGGRGRG RGYHYHNNNQ QSYHNHQQHN HQNSNNRNAA HPVGTPPSNH PAKNEQQQQA
301: QPQPQPQPQP QPPAGANKQP PGPRMPDGTR GFAMGRGKPQ TSTTTPSASS GSEP

Best Arabidopsis Sequence Match ( AT2G43970.1 )
(BLAST)

001: MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA
401: DVEHEEDDAT TSEQQPIEKQ SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ NHNHNGRGNH HHHHHHQVGT
501: QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV MVQAE

Arabidopsis Description

LARP6BLa-related protein 6B [Source:UniProtKB/Swiss-Prot;Acc:O80567]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.