Factsheet for Bra004795.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018797.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43970.1	Bra018797.1-P	AT1G49760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79791	Canola	nucleus	76.77	76.0
CDY17896	Canola	nucleus	67.27	73.51
AT2G43970.1	Thale cress	nucleus	71.11	64.59
VIT_09s0002g07980.t01	Wine grape	cytosol	7.27	52.94
KRG97304	Soybean	nucleus	47.27	50.0
Os11t0248200-01	Rice	nucleus, plasma membrane	35.56	49.72
KRH69036	Soybean	nucleus	46.26	48.11
GSMUA_Achr3P19230_001	Banana	nucleus	42.22	45.93
PGSC0003DMT400064931	Potato	nucleus	40.81	43.44
Solyc08g015650.2.1	Tomato	nucleus	40.0	43.42
GSMUA_Achr6P18240_001	Banana	nucleus	40.2	43.36
TraesCS7B01G166700.1	Wheat	nucleus	33.94	42.75
TraesCS5D01G126900.3	Wheat	nucleus	40.0	42.58
TraesCS7A01G265700.1	Wheat	nucleus	33.74	42.49
TraesCS5B01G121000.2	Wheat	nucleus	39.8	42.46
TraesCS4D01G084200.1	Wheat	nucleus	41.21	42.32
TraesCS7D01G269000.1	Wheat	nucleus	33.54	42.24
HORVU4Hr1G014800.1	Barley	nucleus	41.21	42.24
TraesCS4A01G229400.1	Wheat	nucleus	41.21	42.24
Os08t0542900-01	Rice	nucleus	36.36	42.15
TraesCS4B01G087000.1	Wheat	nucleus	41.01	42.12
Zm00001d007279_P001	Maize	nucleus	39.8	41.91
Solyc12g019000.1.1	Tomato	nucleus	39.8	41.65
TraesCS5A01G115200.1	Wheat	nucleus	38.99	41.51
HORVU5Hr1G029110.1	Barley	nucleus	38.59	41.34
EES08246	Sorghum	nucleus	40.0	41.16
HORVU7Hr1G056460.1	Barley	nucleus	31.92	40.51
EES15258	Sorghum	nucleus	35.35	40.05
Os12t0225100-01	Rice	nucleus	19.6	39.92
EES16897	Sorghum	nucleus	38.79	39.26
Zm00001d031707_P001	Maize	nucleus	33.94	39.07
GSMUA_Achr2P11420_001	Banana	mitochondrion	37.98	38.13
PGSC0003DMT400075259	Potato	nucleus	37.98	36.29
Solyc12g096640.1.1	Tomato	nucleus, plastid	37.37	36.06
Zm00001d023987_P001	Maize	nucleus	32.73	33.06
Bra022387.1-P	Field mustard	nucleus	28.28	31.6
Bra001733.1-P	Field mustard	nucleus	28.69	31.0
Bra017566.1-P	Field mustard	nucleus	22.02	28.17
Bra025027.1-P	Field mustard	nucleus	21.62	27.37
Zm00001d020113_P001	Maize	cytosol	20.0	24.87

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra004795	EnsemblPlants:Bra004795.1	EnsemblPlants:Bra004795.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0030529	GO:GO:1990904	InterPro:IPR000504	InterPro:IPR006630
InterPro:IPR012677	InterPro:IPR036388	InterPro:La_HTH	InterPro:La_like_plant_RRM	InterPro:Lupus_La	UniProt:M4CKR0
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF05383	PRINTS:PR00302	PFscan:PS50102	PFscan:PS50961	PANTHER:PTHR22792
PANTHER:PTHR22792:SF52	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00715	SUPFAM:SSF46785	SUPFAM:SSF54928
UniParc:UPI0002547C47	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

AT2G43970 (E=7e-137) | La domain-containing protein

Coordinates

chrA05:-:1863096..1865725

Molecular Weight (calculated)

55161.6 Da

IEP (calculated)

8.777

GRAVY (calculated)

-0.992

Length

495 amino acids

Sequence
(BLAST)

001: MADQQTLDSD DLSHSTSSDP SLLRSLSSSR LNAGAPEFVP GRTTPPPRMI IPPPPPHGML HMYHHQRPFN VPVLGPVPIQ PHHHPHRFHH NRPQNQHYVP
101: VRSHQQEPDS VVKKRDHKRE SKNNDQTNEA GASSVVIDPK TGLPEDTIQK IVNQVEYYFS DLNLATTDHL MRFISKDPEG YVPIQVVASF KKVKAVVSGN
201: SQLATVLQNS AKLVVSEDGK KVRRLNPVTE AALEELQSRI VIAENLPEDH CYQNLMKIFS TVGSVKNIRT CQPQITGNAV PPAARSAKSD GNLFSNKVHA
301: FVEYETVELA EKAVAELNEA GNWRSSLKVR LMLKPQTKEP KQGQGRGRKG HDVEVEHEED EATASEQQQQ QPIEKLSEEC SGEWDTHVPE QAVIGEEQGN
401: EKAAGQRKGR SRGRGKGRGR GQPHQNQNQN HNHNGRGNHH NHNHHHQHQV GTPPSNNQMN SMEQQPKQQP PGPRMPDGTR GFSMGRGKPI TVQAD

Best Arabidopsis Sequence Match ( AT2G43970.1 )
(BLAST)

001: MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA
401: DVEHEEDDAT TSEQQPIEKQ SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ NHNHNGRGNH HHHHHHQVGT
501: QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV MVQAE

Arabidopsis Description

LARP6BLa-related protein 6B [Source:UniProtKB/Swiss-Prot;Acc:O80567]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.