Factsheet for TraesCS7A01G265700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G359000.1
TraesCS2B01G378400.1
TraesCS2D01G358000.1
TraesCS5A01G161800.2
TraesCS5B01G159400.1
TraesCS5D01G167000.1
TraesCS7A01G288700.1
TraesCS7B01G182800.3
TraesCS7D01G287900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43970.1	TraesCS2A01G359000.1	AT1G49760.1	21798944
AT2G43970.1	TraesCS2B01G378400.1	AT1G49760.1	21798944
AT2G43970.1	TraesCS2D01G358000.1	AT1G49760.1	21798944
AT2G43970.1	TraesCS5A01G161800.2	AT1G49760.1	21798944
AT2G43970.1	TraesCS5B01G159400.1	AT1G49760.1	21798944
AT2G43970.1	TraesCS5D01G167000.1	AT1G49760.1	21798944
AT2G43970.1	TraesCS7A01G288700.1	AT1G49760.1	21798944
AT2G43970.1	TraesCS7B01G182800.3	AT1G49760.1	21798944
AT2G43970.1	TraesCS7D01G287900.1	AT1G49760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G166700.1	Wheat	nucleus	89.57	89.57
TraesCS7D01G269000.1	Wheat	nucleus	89.31	89.31
HORVU7Hr1G056460.1	Barley	nucleus	86.26	86.92
Os08t0542900-01	Rice	nucleus	61.07	56.21
Zm00001d031707_P001	Maize	nucleus	60.56	55.35
EES15258	Sorghum	nucleus	60.05	54.0
VIT_09s0002g07980.t01	Wine grape	cytosol	8.4	48.53
VIT_05s0094g01400.t01	Wine grape	mitochondrion	37.66	45.54
GSMUA_Achr3P19230_001	Banana	nucleus	47.07	40.66
GSMUA_Achr6P18240_001	Banana	nucleus	46.31	39.65
TraesCS5A01G115200.1	Wheat	nucleus	45.29	38.28
CDY17896	Canola	nucleus	42.24	36.64
Solyc08g015650.2.1	Tomato	nucleus	41.98	36.18
KRG97304	Soybean	nucleus	43.0	36.11
KRH69036	Soybean	nucleus	43.26	35.71
TraesCS4A01G229400.1	Wheat	nucleus	43.77	35.61
GSMUA_Achr2P11420_001	Banana	mitochondrion	44.53	35.5
CDX79791	Canola	nucleus	43.77	34.4
PGSC0003DMT400064931	Potato	nucleus	40.2	33.98
Bra004795.1-P	Field mustard	nucleus	42.49	33.74
Zm00001d020113_P001	Maize	cytosol	33.84	33.42
Solyc12g019000.1.1	Tomato	nucleus	38.17	31.71
AT2G43970.1	Thale cress	nucleus	43.51	31.38
TraesCS2A01G256900.1	Wheat	nucleus	35.37	30.82
Solyc12g096640.1.1	Tomato	nucleus, plastid	36.13	27.68
PGSC0003DMT400075259	Potato	nucleus	36.13	27.41
TraesCS3A01G293900.1	Wheat	nucleus	30.28	24.29

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:1990904	InterPro:IPR000504
InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388	InterPro:La_HTH	InterPro:La_like_plant_RRM	InterPro:Lupus_La
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF05383	PRINTS:PR00302	PFscan:PS50102	PFscan:PS50961	PANTHER:PTHR22792
PANTHER:PTHR22792:SF54	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00715	SUPFAM:SSF46785	SUPFAM:SSF54928
EnsemblPlantsGene:TraesCS7A01G265700	EnsemblPlants:TraesCS7A01G265700.1	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	TIGR:cd12288	SEG:seg

Description

No Description!

Coordinates

chr7A:-:266977182..266981214

Molecular Weight (calculated)

43256.4 Da

IEP (calculated)

7.134

GRAVY (calculated)

-0.825

Length

393 amino acids

Sequence
(BLAST)

001: MAQDEVPESS SPSSAAAGRL NAAAPEFTPR SAAPHQAHPH RRGPHHHHHH HHQPHHQHQH QYRHQHHHQG EDEGDAAAVV DNAQLVLPEE LARRVVKQVE
101: FYFSDVNLAT TDHLMKYITK DPDGFVPMTV VASFRKIREL IDRSLLPGAL RTSTELVVSD DGKMVRRRVP FSDVDAEEVQ SRIIVAEKLP EDHRYQNLMR
201: IFSTVGSVKS IRTCYPQGID ISAGKSSRIE MLFANKLHAF VEYGTVEDAE KAVAEFSGGR NWRDGPRVRS LLGCLKHGIG QGRKGGDEEA ADEDDPEEYE
301: AEDAAQGEDG FYDKAGMRQG RGRGRGGRGR GRGQYHGQSR DGGHPIGTPP SNHSAEHPVV SKPPPGPRMP DGTKGFAMGR GKPQVSPAVL SDA

Best Arabidopsis Sequence Match ( AT2G43970.1 )
(BLAST)

001: MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA
401: DVEHEEDDAT TSEQQPIEKQ SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ NHNHNGRGNH HHHHHHQVGT
501: QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV MVQAE

Arabidopsis Description

LARP6BLa-related protein 6B [Source:UniProtKB/Swiss-Prot;Acc:O80567]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.