Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G46250.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT5G46250.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT5G46250.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G328600.1 | Wheat | nucleus | 83.67 | 83.67 |
| Zm00001d019729_P001 | Maize | nucleus | 13.88 | 75.56 |
| TraesCS3D01G293700.1 | Wheat | nucleus | 65.1 | 66.18 |
| HORVU3Hr1G072800.1 | Barley | nucleus | 57.35 | 55.53 |
| VIT_10s0003g03190.t01 | Wine grape | nucleus | 32.24 | 46.2 |
| KXG33403 | Sorghum | nucleus | 38.98 | 42.35 |
| Zm00001d043418_P136 | Maize | nucleus | 39.18 | 41.74 |
| Solyc02g070550.2.1 | Tomato | nucleus | 30.82 | 40.37 |
| PGSC0003DMT400054517 | Potato | nucleus | 31.43 | 39.09 |
| KRH21060 | Soybean | nucleus | 30.82 | 37.75 |
| KRH11196 | Soybean | nucleus | 30.82 | 37.28 |
| CDY35155 | Canola | nucleus | 29.59 | 37.08 |
| Bra017566.1-P | Field mustard | nucleus | 29.18 | 36.95 |
| GSMUA_Achr1P13840_001 | Banana | nucleus, plastid | 34.08 | 36.54 |
| CDY03229 | Canola | nucleus | 28.37 | 35.73 |
| CDY68074 | Canola | nucleus | 27.14 | 34.1 |
| Bra025027.1-P | Field mustard | nucleus | 27.14 | 34.02 |
| CDY33465 | Canola | nucleus | 26.94 | 33.76 |
| AT5G46250.1 | Thale cress | nucleus | 27.55 | 31.99 |
| TraesCS7A01G265700.1 | Wheat | nucleus | 24.29 | 30.28 |
| TraesCS2A01G256900.1 | Wheat | nucleus | 26.94 | 29.27 |
| TraesCS5A01G115200.1 | Wheat | nucleus | 27.14 | 28.6 |
| TraesCS4A01G229400.1 | Wheat | nucleus | 26.94 | 27.33 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:3.30.70.330 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:1990904 | InterPro:IPR000504 |
| InterPro:IPR006630 | InterPro:IPR012677 | InterPro:IPR036388 | InterPro:La_HTH | InterPro:Lupus_La | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF05383 | PRINTS:PR00302 | PFscan:PS50102 | PFscan:PS50961 | PANTHER:PTHR22792 | PANTHER:PTHR22792:SF52 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00715 | SUPFAM:SSF46785 | SUPFAM:SSF54928 | EnsemblPlantsGene:TraesCS3A01G293900 |
| EnsemblPlants:TraesCS3A01G293900.1 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | TIGR:cd08033 | SEG:seg | : |
Description
No Description!
Coordinates
chr3A:-:526524277..526529072
Molecular Weight (calculated)
52185.4 Da
IEP (calculated)
5.202
GRAVY (calculated)
-0.493
Length
490 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGQASHPVA VAPESLPQPP PHLETEAEDD PVVVPDASDA ASSEPSKVGA LSTSPLIKAE DDPVVVPDSV ELASSEASVV SAGGVVPPPP PSRPLDAEED
101: SLIVPDTSEA VPSEATNVGT GSVVPLLPSP PLEAEDDPLI VPVIDASSEA SDVVTSGVVL TDELRDKIVK QVEYYFSDEN LPTDEFMLKF VMKNKEGLGN
201: VPLGVIASFR KMKKLVQDHS TIEAALRTSS KLVVSSNGKR VRRLHPLPCN ELKDVKKRTV VVENLPLDFA LESVQEKFGS VGKIMKITIH DPHAVGESAA
301: SKKPDFMLSN KVHAIVEYEA VEAAEKAVAT LNDERNWRTG MRVILLAKRS VVGSGKNIQS SKENHGTCLR KNNEGQFSKE VQQSVSEKNG GADSGEVASD
401: KENVNSDVNH EEVRQHQRAN ASGGRKGRYR SQGKGLSGQG HGSSPTIPGS DSANKPISGP RMPDGTRGFT MGRGRSLPLP KAEKAQKTEE
101: SLIVPDTSEA VPSEATNVGT GSVVPLLPSP PLEAEDDPLI VPVIDASSEA SDVVTSGVVL TDELRDKIVK QVEYYFSDEN LPTDEFMLKF VMKNKEGLGN
201: VPLGVIASFR KMKKLVQDHS TIEAALRTSS KLVVSSNGKR VRRLHPLPCN ELKDVKKRTV VVENLPLDFA LESVQEKFGS VGKIMKITIH DPHAVGESAA
301: SKKPDFMLSN KVHAIVEYEA VEAAEKAVAT LNDERNWRTG MRVILLAKRS VVGSGKNIQS SKENHGTCLR KNNEGQFSKE VQQSVSEKNG GADSGEVASD
401: KENVNSDVNH EEVRQHQRAN ASGGRKGRYR SQGKGLSGQG HGSSPTIPGS DSANKPISGP RMPDGTRGFT MGRGRSLPLP KAEKAQKTEE
001: MSSLPLRSGE KMESPSISDA VPLHAPEDAT ADFSQPQSPL HEVDSFPVTE SSDDVVVNVS EIPNLSPSDD DFDHERNSGE DRDQDHGENP VETDGVVVPI
101: DELNQKIIRQ VEYYFSDENL PTDKFLLNAM KRNKKGFVPI STIATFHKMK KLTRDHALIV SALKESSFLV VSADEKKVKR LSPLPEIRDP KIFTVLVENL
201: PEDHSNENIR EIFGKAGSIK SVSICDPNAV EESEKGGKKE NFIRTRLHAF VEYETVEAAE KAAATLNNEQ DWRNGLRVKL LEQAAGKFAQ RRPARREVDK
301: EKDTTGRVHD QTGGEKNKKT REHQNHRLHH SDNPADDDGG NHQKDKNGNK GRVVGQGRRQ NHQGGNGIGH GTASSSSHPN YHPVEVSKRP PGPRMPDGTR
401: GFTMGRGKAI PPPTSTQTSH EV
101: DELNQKIIRQ VEYYFSDENL PTDKFLLNAM KRNKKGFVPI STIATFHKMK KLTRDHALIV SALKESSFLV VSADEKKVKR LSPLPEIRDP KIFTVLVENL
201: PEDHSNENIR EIFGKAGSIK SVSICDPNAV EESEKGGKKE NFIRTRLHAF VEYETVEAAE KAAATLNNEQ DWRNGLRVKL LEQAAGKFAQ RRPARREVDK
301: EKDTTGRVHD QTGGEKNKKT REHQNHRLHH SDNPADDDGG NHQKDKNGNK GRVVGQGRRQ NHQGGNGIGH GTASSSSHPN YHPVEVSKRP PGPRMPDGTR
401: GFTMGRGKAI PPPTSTQTSH EV
Arabidopsis Description
LARP6ALa-related protein 6A [Source:UniProtKB/Swiss-Prot;Acc:Q94A38]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.