CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03088
CDY17621
CDY21807
CDY36905
CDY54257
CDY59856
CDY68129
CDY70164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46250.1	CDY03088	AT2G01950.1	19000166
AT5G46250.1	CDY17621	AT2G01950.1	19000166
AT5G46250.1	CDY21807	AT3G48100.1	18642946
AT5G46250.1	CDY36905	AT3G48100.1	18642946
AT5G46250.1	CDY54257	AT3G48100.1	18642946
AT5G46250.1	CDY59856	AT3G48100.1	18642946
AT5G46250.1	CDY68129	AT3G48100.1	18642946
AT5G46250.1	CDY70164	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35155	Canola	nucleus	80.72	80.31
CDY33465	Canola	nucleus	66.07	65.73
CDY68074	Canola	nucleus	60.15	60.0
AT5G46250.1	Thale cress	nucleus	60.41	55.69
Zm00001d019729_P001	Maize	nucleus	11.57	50.0
VIT_10s0003g03190.t01	Wine grape	nucleus	43.96	50.0
KRH21060	Soybean	nucleus	43.19	42.0
Solyc02g070550.2.1	Tomato	nucleus	39.33	40.91
KRH11196	Soybean	nucleus	41.13	39.51
PGSC0003DMT400054517	Potato	nucleus	38.3	37.82
KXG33403	Sorghum	nucleus	35.99	31.04
GSMUA_Achr1P13840_001	Banana	nucleus, plastid	34.96	29.76
HORVU3Hr1G072800.1	Barley	nucleus	37.02	28.46
TraesCS3B01G328600.1	Wheat	nucleus	35.73	28.37
TraesCS3A01G293900.1	Wheat	nucleus	35.73	28.37
Zm00001d043418_P136	Maize	nucleus	33.16	28.04
TraesCS3D01G293700.1	Wheat	nucleus	34.45	27.8
CDX99268	Canola	nucleus	30.33	26.58
CDY22991	Canola	nucleus	29.05	26.22
CDX82312	Canola	nucleus	28.53	25.75
CDX92302	Canola	nucleus	28.79	25.28
CDY17896	Canola	nucleus	27.51	23.62
CDX79791	Canola	nucleus	27.25	21.2

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	GO:A0A078ERA0	EnsemblPlants:CDY03229	ProteinID:CDY03229
ProteinID:CDY03229.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:1990904	EnsemblPlantsGene:GSBRNA2T00115743001	InterPro:IPR000504	InterPro:IPR006630
InterPro:IPR012677	InterPro:IPR036388	InterPro:La_HTH	InterPro:La_like_plant_RRM	InterPro:Lupus_La	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF05383	PRINTS:PR00302	PFscan:PS50102	PFscan:PS50961	PANTHER:PTHR22792
PANTHER:PTHR22792:SF52	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM00715	SUPFAM:SSF46785
SUPFAM:SSF54928	UniParc:UPI0004EE8080	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

BnaC09g19270D

Coordinates

chrLK031941:-:951272..953952

Molecular Weight (calculated)

42818.5 Da

IEP (calculated)

7.023

GRAVY (calculated)

-0.868

Length

389 amino acids

Sequence
(BLAST)

001: MESTEAPSVA VVKSQVVEDA IGSTADVSRP PSHEVDSLRV AGSSDDVVVV SEIPCLTPSD DDFDHGEDHG DNDVVVVVEY YFSDENLPTD KFLLNAMKKN
101: KKGFVPISTI ATFHKMKKLT RDHAFIVSAL KDSSFLVVSS DEKKVKRRSP LPEVRDPKIF TVLVENLPED HSDENIRAIF GKAGSIKSVS ICDPNAVEES
201: EKGCKKDKFI RTRLHAFVEY ESVEAADKAA ATLNNEQDWR NGLRVKLLEQ TGKFAQRRPG RKEVDTVKDN TGQVHDQIGG EENKKSNEHQ HHRHHHSDTP
301: ADNASDSGDK NGNKTRSRGR GRRQNNQGGN GHGSSPSTSS SLHHYYHHHH AEVSKPPPGP RMPDGTRGFT LGRGKPLPAP TSAQTSHEA

Best Arabidopsis Sequence Match ( AT5G46250.1 )
(BLAST)

001: MSSLPLRSGE KMESPSISDA VPLHAPEDAT ADFSQPQSPL HEVDSFPVTE SSDDVVVNVS EIPNLSPSDD DFDHERNSGE DRDQDHGENP VETDGVVVPI
101: DELNQKIIRQ VEYYFSDENL PTDKFLLNAM KRNKKGFVPI STIATFHKMK KLTRDHALIV SALKESSFLV VSADEKKVKR LSPLPEIRDP KIFTVLVENL
201: PEDHSNENIR EIFGKAGSIK SVSICDPNAV EESEKGGKKE NFIRTRLHAF VEYETVEAAE KAAATLNNEQ DWRNGLRVKL LEQAAGKFAQ RRPARREVDK
301: EKDTTGRVHD QTGGEKNKKT REHQNHRLHH SDNPADDDGG NHQKDKNGNK GRVVGQGRRQ NHQGGNGIGH GTASSSSHPN YHPVEVSKRP PGPRMPDGTR
401: GFTMGRGKAI PPPTSTQTSH EV

Arabidopsis Description

LARP6ALa-related protein 6A [Source:UniProtKB/Swiss-Prot;Acc:Q94A38]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.