CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22991	Canola	nucleus	89.33	89.33
Bra001733.1-P	Field mustard	nucleus	90.72	85.37
CDX99268	Canola	nucleus	76.8	74.55
AT3G19090.2	Thale cress	nucleus	75.64	67.63
CDX92302	Canola	nucleus	64.97	63.21
PGSC0003DMT400066353	Potato	nucleus	34.57	52.65
VIT_03s0063g01050.t01	Wine grape	nucleus	48.49	50.73
KRH50235	Soybean	nucleus	46.64	50.38
KRH71184	Soybean	nucleus	46.17	49.26
PGSC0003DMT400083493	Potato	nucleus	44.08	46.23
Solyc01g108310.2.1	Tomato	nucleus	42.92	46.02
Solyc10g050550.1.1	Tomato	nucleus	41.3	43.2
Os07t0102500-01	Rice	nucleus	40.37	39.73
Os03t0566500-01	Rice	nucleus, plastid	37.59	37.76
GSMUA_Achr4P23770_001	Banana	nucleus	40.84	37.45
Zm00001d032397_P001	Maize	nucleus	35.03	36.56
TraesCS2B01G285700.1	Wheat	nucleus	37.59	36.32
TraesCS2D01G265900.1	Wheat	nucleus	37.59	36.24
TraesCS2A01G256900.1	Wheat	nucleus	37.59	35.92
KXG38156	Sorghum	nucleus	37.82	34.68
Zm00001d018613_P004	Maize	nucleus	39.91	34.06
EER97821	Sorghum	nucleus	40.84	33.85
CDY17896	Canola	nucleus	32.25	30.68
CDX79791	Canola	nucleus	34.34	29.6
CDY33465	Canola	nucleus	25.99	28.64
CDY03229	Canola	nucleus	25.75	28.53
CDY68074	Canola	nucleus	25.52	28.21
CDY35155	Canola	nucleus	25.29	27.88

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	GO:A0A078CZL9	InterPro:Ataxin-2_C	EnsemblPlants:CDX82312
ProteinID:CDX82312	ProteinID:CDX82312.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030529	GO:GO:1990904	EnsemblPlantsGene:GSBRNA2T00137424001
InterPro:IPR000504	InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388	InterPro:La_HTH	InterPro:La_like_plant_RRM
InterPro:Lupus_La	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF05383	PFAM:PF07145	PRINTS:PR00302
PFscan:PS50102	PFscan:PS50961	PANTHER:PTHR22792	PANTHER:PTHR22792:SF62	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SMART:SM00715	SUPFAM:SSF46785	SUPFAM:SSF54928	UniParc:UPI0004EE27EF	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

BnaA03g35090D

Coordinates

chrLK031828:-:516776..519772

Molecular Weight (calculated)

47583.5 Da

IEP (calculated)

10.314

GRAVY (calculated)

-0.629

Length

431 amino acids

Sequence
(BLAST)

001: MAQMQREPVE SVTKETTEKK ILDGGGGGGG GGSSASKASS FKFNAQAPEF VPRSHATALT PQRRRRSYRR FSVVGLDLHP VHHQNIHDPT AAFYVSNPVV
101: QFPANQNLSS SSKSLLSDDL RLKIVKQVEY QFTDMSLLAN ESISKHINKD PEGYVPISYI ASTKKIKALT SHHHLVALAL RSSSKLVVSE DNKKVRRKIP
201: FTDRDREELQ GRTVVVENLP DDHSYQNLEK IFGVVGNVKA IRICHPPESN TSRPKGDFLM SNKIHALIEY DHTVVADKAV EKLNDERNWR KGLRVRLLLR
301: CSPKSVLKHR RNFDGILIDD ESPYESGEDS PRLHLTEQQL DNDGDDNNIG GLWGKGRGKG RGRSPRSYAL GGGGHSFGIG LGLGLSIGSM SRSLGLHESS
401: SPKTATKGPR MPDGTRGFTM GRGKTFYLTL T

Best Arabidopsis Sequence Match ( AT3G19090.1 )
(BLAST)

001: MAQMQREEVE SVTTEKKRLD GGGGSSGAQA TAFKFNAQAP EFVPRSHTTA PAPQVSPVSG YFYPCFHYNG GCIGGCGGGV CGGGGTGVGT QSSDWIYVGG
101: GDPTAQHQHV HDPAAAFYIS NPAVQFPASQ NSSSSSKNLL SDDLRLKIVK QVEYQFTDMS LLANESISKH ISKDPEGYVP VSYIASTKKI KALTSNHHLV
201: SLALRSSSKL VVSEDGKKVK RTSQFTDRDR EELQGRTVVA ENLPDDHSYQ NLEKIFGVVG NVKAIRICHP PESNSSRPKG DFLMSNKIHA LIEYDNTVIA
301: DKAVEKLNDE RNWRKGLRVR LLLRCSPKSV LKNRRNFDGI LIDDELPSYE SGEDSPRLHL TESQLDNDGD DNNVGGLWGK GRGKGRGRSP RSYAVGGGGR
401: SFGIGLGVSL GIPSLGSHES SSPKTATKGP RMPDGTRGFT MGRGKPSISL SPNNL

Arabidopsis Description

RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLZ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.