Factsheet for Zm00001d018613_P004

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97821	Sorghum	nucleus	71.29	69.23
TraesCS2A01G256900.1	Wheat	nucleus	58.22	65.19
TraesCS2D01G265900.1	Wheat	nucleus	57.62	65.1
TraesCS2B01G285700.1	Wheat	nucleus	57.23	64.8
Os07t0102500-01	Rice	nucleus	54.46	62.79
Zm00001d032397_P001	Maize	nucleus	43.37	53.03
PGSC0003DMT400066353	Potato	nucleus	27.13	48.41
KRH50235	Soybean	nucleus	37.03	46.87
KRH71184	Soybean	nucleus	37.03	46.29
VIT_03s0063g01050.t01	Wine grape	nucleus	37.62	46.12
Solyc01g108310.2.1	Tomato	nucleus	34.85	43.78
GSMUA_Achr4P23770_001	Banana	nucleus	39.01	41.91
CDX99268	Canola	nucleus	36.63	41.67
PGSC0003DMT400083493	Potato	nucleus	33.86	41.61
CDX92302	Canola	nucleus	35.64	40.63
Bra022387.1-P	Field mustard	nucleus	35.64	40.63
CDX82312	Canola	nucleus	34.06	39.91
Bra001733.1-P	Field mustard	nucleus	35.64	39.3
Solyc10g050550.1.1	Tomato	nucleus	31.88	39.08
Zm00001d019729_P001	Maize	nucleus	6.93	38.89
CDY22991	Canola	nucleus	32.67	38.28
AT3G19090.2	Thale cress	nucleus	35.64	37.34
Zm00001d031707_P001	Maize	nucleus	27.72	32.56
Zm00001d007279_P001	Maize	nucleus	28.71	30.85
Zm00001d043418_P136	Maize	nucleus	23.56	25.87
Zm00001d023987_P001	Maize	nucleus	24.36	25.1
Zm00001d020113_P001	Maize	cytosol	16.44	20.85

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100283022	Gene3D:3.30.70.330	MapMan:35.1	UniProt:A0A1D6HQM9	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0030529	GO:GO:1990904	InterPro:IPR000504	InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388
InterPro:La_HTH	InterPro:La_like_plant_RRM	InterPro:Lupus_La	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:ONM50883.1	PFAM:PF00076
PFAM:PF05383	PRINTS:PR00302	PFscan:PS50102	PFscan:PS50961	PANTHER:PTHR22792	PANTHER:PTHR22792:SF62
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM00715	SUPFAM:SSF46785	SUPFAM:SSF54928
UniParc:UPI0002209DFD	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d018613	EnsemblPlants:Zm00001d018613_P004	EnsemblPlants:Zm00001d018613_T004
SEG:seg	:	:	:	:	:

Description

La-related protein 6C

Coordinates

chr7:-:871207..880116

Molecular Weight (calculated)

53835.3 Da

IEP (calculated)

10.117

GRAVY (calculated)

-0.563

Length

505 amino acids

Sequence
(BLAST)

001: MAQAQPQAQA TSEVVVKCAT KAMTNDKDRA AIASASAAAS QGSVGSGAAT PFKFNVHAPE FVPMSPAAAS PMASPMSAPA GGYYSPFMQM QPGLAPADWS
101: FFHEHEPVFF MPDLAHAKFG AATATAAGAA GSNSAQAKGA ATTTDVAQKI VKQVEYQFSD INLVANEFLL KIMNKDTEGY VPLSVIASWK KIKSLGATNQ
201: MLVKALRTST KLNVSDDGKK VRRRQAFTEK HKEELQSRMI IAENLPEDSS RNSLEKIFGV VGSVKNIKIC HPQEPNTARA SKSDTLVSNK MHALVEYETS
301: QQAEKAVEKL NDERNWRKGL RVRTVLRRSP KSVTRLKRAD LDHFVASDDD SPHSSSDSPT ADCSSPAEAA AAHAHVYHQQ QQEEQQNGGN CKHKGSWARG
401: RAGTATKLHI TAPQSPQSAP AGMAGGHFDP TSPRPSSSSQ KQCPSSPGSR QLPASASASS HKCPFSPRQA QHHPPQGPRM PDGTRGFTMG RGKPTSPPAA
501: AAVLV

Best Arabidopsis Sequence Match ( AT3G19090.1 )
(BLAST)

001: MAQMQREEVE SVTTEKKRLD GGGGSSGAQA TAFKFNAQAP EFVPRSHTTA PAPQVSPVSG YFYPCFHYNG GCIGGCGGGV CGGGGTGVGT QSSDWIYVGG
101: GDPTAQHQHV HDPAAAFYIS NPAVQFPASQ NSSSSSKNLL SDDLRLKIVK QVEYQFTDMS LLANESISKH ISKDPEGYVP VSYIASTKKI KALTSNHHLV
201: SLALRSSSKL VVSEDGKKVK RTSQFTDRDR EELQGRTVVA ENLPDDHSYQ NLEKIFGVVG NVKAIRICHP PESNSSRPKG DFLMSNKIHA LIEYDNTVIA
301: DKAVEKLNDE RNWRKGLRVR LLLRCSPKSV LKNRRNFDGI LIDDELPSYE SGEDSPRLHL TESQLDNDGD DNNVGGLWGK GRGKGRGRSP RSYAVGGGGR
401: SFGIGLGVSL GIPSLGSHES SSPKTATKGP RMPDGTRGFT MGRGKPSISL SPNNL

Arabidopsis Description

RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLZ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.