CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50235	Soybean	nucleus	87.62	88.72
VIT_03s0063g01050.t01	Wine grape	nucleus	61.39	60.19
PGSC0003DMT400066353	Potato	nucleus	38.61	55.12
CDX99268	Canola	nucleus	54.46	49.55
Solyc01g108310.2.1	Tomato	nucleus	48.51	48.76
PGSC0003DMT400083493	Potato	nucleus	49.01	48.18
Bra022387.1-P	Field mustard	nucleus	52.48	47.86
CDX92302	Canola	nucleus	52.48	47.86
Bra001733.1-P	Field mustard	nucleus	52.72	46.51
CDX82312	Canola	nucleus	49.26	46.17
CDY22991	Canola	nucleus	49.01	45.94
Solyc10g050550.1.1	Tomato	nucleus	46.53	45.63
AT3G19090.2	Thale cress	nucleus	53.71	45.02
Os07t0102500-01	Rice	nucleus	46.04	42.47
TraesCS2B01G285700.1	Wheat	nucleus	46.53	42.15
TraesCS2A01G256900.1	Wheat	nucleus	47.03	42.13
TraesCS2D01G265900.1	Wheat	nucleus	46.53	42.06
Os03t0566500-01	Rice	nucleus, plastid	42.57	40.09
GSMUA_Achr4P23770_001	Banana	nucleus	46.04	39.57
Zm00001d018613_P004	Maize	nucleus	46.29	37.03
Zm00001d032397_P001	Maize	nucleus	37.38	36.56
KXG38156	Sorghum	nucleus	41.58	35.74
EER97821	Sorghum	nucleus	45.79	35.58
KRG97304	Soybean	nucleus	37.38	32.27
KRH69036	Soybean	nucleus	37.62	31.93
KRH11196	Soybean	nucleus	29.7	29.63
KRH21060	Soybean	nucleus	28.47	28.75

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100808205	Gene3D:3.30.70.330	MapMan:35.1	EMBL:ACUP02000877	InterPro:Ataxin-2_C
ncoils:Coil	EnsemblPlantsGene:GLYMA_02G135300	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030529	GO:GO:1990904	UniProt:I1JEX4
InterPro:IPR000504	InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388	EnsemblPlants:KRH71184	ProteinID:KRH71184
ProteinID:KRH71184.1	InterPro:La_HTH	InterPro:La_like_plant_RRM	InterPro:Lupus_La	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF05383	PFAM:PF07145	PRINTS:PR00302	PFscan:PS50102	PFscan:PS50961	PANTHER:PTHR22792
PANTHER:PTHR22792:SF62	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00715	SUPFAM:SSF46785	SUPFAM:SSF54928
UniParc:UPI0002336C2D	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:13994158..13997691

Molecular Weight (calculated)

45297.3 Da

IEP (calculated)

8.933

GRAVY (calculated)

-0.791

Length

404 amino acids

Sequence
(BLAST)

001: MAQAQHEERI HENQKEKETQ ETGNSSFKFN AQAPEFVPRS HTQMPVSGYY YPCFQIFGGS SESADWFFVG DQDPSCLIPT PNVAQPNSSK NILTPDLQQK
101: IVKQVEYQFS DMSLLANESF HKQMNKDPEG YVPITVIAST KKVKSLVSNI NMLTQAIRSS SKLVLSVDGK KVKRKHPYTE KEKEDLLART VVAENLPDDH
201: SHQNLQKIFG IVGSVKTIRI CHPQEPNSSR PKSDFIVSNK LHALVEYETS DIAEKAAEKL NDERNWRKGM RVRLFLRCSP KSVLKSRKSE FDGYLDDDEI
301: INFESVEDSS PSHSNNAELF ETNVDENWVG CKKGWAGRGR GKGRGRTQGR GLLAPPSQSS STILCDAHTK HNTKGPRMPD GTRGFTMGRG KPMSPSSHVT
401: SPKE

Best Arabidopsis Sequence Match ( AT3G19090.1 )
(BLAST)

001: MAQMQREEVE SVTTEKKRLD GGGGSSGAQA TAFKFNAQAP EFVPRSHTTA PAPQVSPVSG YFYPCFHYNG GCIGGCGGGV CGGGGTGVGT QSSDWIYVGG
101: GDPTAQHQHV HDPAAAFYIS NPAVQFPASQ NSSSSSKNLL SDDLRLKIVK QVEYQFTDMS LLANESISKH ISKDPEGYVP VSYIASTKKI KALTSNHHLV
201: SLALRSSSKL VVSEDGKKVK RTSQFTDRDR EELQGRTVVA ENLPDDHSYQ NLEKIFGVVG NVKAIRICHP PESNSSRPKG DFLMSNKIHA LIEYDNTVIA
301: DKAVEKLNDE RNWRKGLRVR LLLRCSPKSV LKNRRNFDGI LIDDELPSYE SGEDSPRLHL TESQLDNDGD DNNVGGLWGK GRGKGRGRSP RSYAVGGGGR
401: SFGIGLGVSL GIPSLGSHES SSPKTATKGP RMPDGTRGFT MGRGKPSISL SPNNL

Arabidopsis Description

RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLZ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.