CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018613_P004	Maize	nucleus	69.23	71.29
TraesCS2D01G265900.1	Wheat	nucleus	56.15	65.32
TraesCS2B01G285700.1	Wheat	nucleus	55.96	65.25
TraesCS2A01G256900.1	Wheat	nucleus	56.15	64.75
Os07t0102500-01	Rice	nucleus	51.73	61.42
KXG38156	Sorghum	nucleus	45.0	49.79
PGSC0003DMT400066353	Potato	nucleus	26.35	48.41
KRH50235	Soybean	nucleus	35.38	46.12
KRH71184	Soybean	nucleus	35.58	45.79
VIT_03s0063g01050.t01	Wine grape	nucleus	35.58	44.9
Solyc01g108310.2.1	Tomato	nucleus	33.27	43.03
GSMUA_Achr4P23770_001	Banana	nucleus	38.46	42.55
PGSC0003DMT400083493	Potato	nucleus	32.88	41.61
CDX82312	Canola	nucleus	33.85	40.84
CDX99268	Canola	nucleus	34.81	40.77
CDY22991	Canola	nucleus	33.27	40.14
Bra001733.1-P	Field mustard	nucleus	35.19	39.96
CDX92302	Canola	nucleus	34.04	39.95
Bra022387.1-P	Field mustard	nucleus	34.04	39.95
Solyc10g050550.1.1	Tomato	nucleus	30.96	39.08
AT3G19090.2	Thale cress	nucleus	34.62	37.34
EES15258	Sorghum	nucleus	28.08	33.41
EES16897	Sorghum	nucleus	28.85	30.67
EES08246	Sorghum	nucleus	28.27	30.56
KXG33403	Sorghum	nucleus	20.77	23.95

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	UniProt:C5X739	EnsemblPlants:EER97821	ProteinID:EER97821
ProteinID:EER97821.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0030529	GO:GO:1990904	InterPro:IPR000504	InterPro:IPR006630
InterPro:IPR012677	InterPro:IPR036388	InterPro:La_HTH	InterPro:La_like_plant_RRM	InterPro:Lupus_La	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF05383	PRINTS:PR00302	PFscan:PS50102	PFscan:PS50961	PANTHER:PTHR22792
PANTHER:PTHR22792:SF62	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM00715	EnsemblPlantsGene:SORBI_3002G002600
SUPFAM:SSF46785	SUPFAM:SSF54928	UniParc:UPI00081AE70F	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:359315..362295

Molecular Weight (calculated)

55120.5 Da

IEP (calculated)

10.057

GRAVY (calculated)

-0.553

Length

520 amino acids

Sequence
(BLAST)

001: MAQESSDVVV KCATNKAATS DEDGAAVAAA VAPPGPAASA SASAPATPFK FNVHAPEFVP MSPAAASPMS APAGGYYSPF MQMQPGLAPA DWSFFHEHEP
101: VFFMPDFAHA KFGAATATAT AAAAGSNSAQ AKGTAATTDV AQKIVKQVEY QFSDINLVAN EFLLKIMNKD TEGYVPLSVI ASWKKIKSLG ATNQMLVKAL
201: RTSTKLNVSD DGKKVRRRQP FTEKHKEELQ SRMIIAENLP EDSSRNSLEK IFGVVGSVKN IKICHPQEPS TARASKSDTL VSNKMHALVE YETSQQAEKA
301: VEKLNDERNW RKGLRVRTVL RRSPKSVMRL KRADFDHFVG SDDDSPHSSQ MSSDSPTADY SAAEAAAAAA AAHAHAHVQQ HQEDQQQQQN NGGSKQKGWA
401: RGRGTTKLHI TAPQSPQSAP AGMAGHFDPS SPRTSSSSSQ KQCPSSPGGS RQQQVSAAAS ASSQKCPFSP RQHQPHPPQG PRMPDGTRGF TMGRGKPAAA
501: APPTSPAAAA ARATPAPVLV

Best Arabidopsis Sequence Match ( AT3G19090.1 )
(BLAST)

001: MAQMQREEVE SVTTEKKRLD GGGGSSGAQA TAFKFNAQAP EFVPRSHTTA PAPQVSPVSG YFYPCFHYNG GCIGGCGGGV CGGGGTGVGT QSSDWIYVGG
101: GDPTAQHQHV HDPAAAFYIS NPAVQFPASQ NSSSSSKNLL SDDLRLKIVK QVEYQFTDMS LLANESISKH ISKDPEGYVP VSYIASTKKI KALTSNHHLV
201: SLALRSSSKL VVSEDGKKVK RTSQFTDRDR EELQGRTVVA ENLPDDHSYQ NLEKIFGVVG NVKAIRICHP PESNSSRPKG DFLMSNKIHA LIEYDNTVIA
301: DKAVEKLNDE RNWRKGLRVR LLLRCSPKSV LKNRRNFDGI LIDDELPSYE SGEDSPRLHL TESQLDNDGD DNNVGGLWGK GRGKGRGRSP RSYAVGGGGR
401: SFGIGLGVSL GIPSLGSHES SSPKTATKGP RMPDGTRGFT MGRGKPSISL SPNNL

Arabidopsis Description

RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLZ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.