Factsheet for AT3G19090.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
peroxisome 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001733.1-P	Field mustard	nucleus	73.86	77.73
CDX99268	Canola	nucleus	70.12	76.13
CDX82312	Canola	nucleus	67.63	75.64
CDY22991	Canola	nucleus	65.35	73.09
Bra022387.1-P	Field mustard	nucleus	62.86	68.4
CDX92302	Canola	nucleus	62.86	68.4
KRH50235	Soybean	nucleus	45.44	54.89
VIT_03s0063g01050.t01	Wine grape	nucleus	46.27	54.13
KRH71184	Soybean	nucleus	45.02	53.71
PGSC0003DMT400066353	Potato	nucleus	30.29	51.59
Solyc01g108310.2.1	Tomato	nucleus	40.04	48.01
PGSC0003DMT400083493	Potato	nucleus	40.46	47.45
Solyc10g050550.1.1	Tomato	nucleus	37.76	44.17
Os07t0102500-01	Rice	nucleus	36.72	40.41
Os03t0566500-01	Rice	nucleus, plastid	35.48	39.86
GSMUA_Achr4P23770_001	Banana	nucleus	37.34	38.3
TraesCS2B01G285700.1	Wheat	nucleus	35.06	37.89
TraesCS2D01G265900.1	Wheat	nucleus	35.06	37.81
TraesCS2A01G256900.1	Wheat	nucleus	35.27	37.69
Zm00001d032397_P001	Maize	nucleus	31.74	37.05
KXG38156	Sorghum	nucleus	35.06	35.96
Zm00001d018613_P004	Maize	nucleus	37.34	35.64
EER97821	Sorghum	nucleus	37.34	34.62
AT5G46250.1	Thale cress	nucleus	24.48	27.96
AT2G43970.1	Thale cress	nucleus	29.25	25.87

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:821444	UniProt:A0A1I9LLZ1	ProteinID:ANM63599.1
ArrayExpress:AT3G19090	EnsemblPlantsGene:AT3G19090	RefSeq:AT3G19090	TAIR:AT3G19090	RefSeq:AT3G19090-TAIR-G	EnsemblPlants:AT3G19090.2
InterPro:Ataxin-2_C	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388	InterPro:La_HTH	InterPro:La_like_plant_RRM	RefSeq:NP_001325674.1
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF05383	PFAM:PF07145	PFscan:PS50102	PFscan:PS50961
PANTHER:PTHR22792	PANTHER:PTHR22792:SF62	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM00715
SUPFAM:SSF46785	SUPFAM:SSF54928	UniParc:UPI00084888A1	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLZ1]

Coordinates

chr3:+:6601441..6603922

Molecular Weight (calculated)

52074.4 Da

IEP (calculated)

9.188

GRAVY (calculated)

-0.480

Length

482 amino acids

Sequence
(BLAST)

001: MAQMQREEVE SVTTEKKRLD GGGGSSGAQA TAFKFNAQAP EFVPRSHTTA PAPQVSPVSG YFYPCFHYNG GCIGGCGGGV CGGGGTGVGT QSSDWIYVGG
101: GDPTAQHQHV HDPAAAFYIS NPAVQFPASQ NSSSSSKNLL SDDLRLKIVK QVEYQFTDMS LLANESISKH ISKDPEGYVP VSYIASTKKI KALTSNHHLV
201: SLALRSSSKL VVSEDGKKVK RTSQFTDRDR EELQVNLNIT KASLYLLSTI YEFLLLFTVL QGRTVVAENL PDDHSYQNLE KIFGVVGNVK AIRICHPPES
301: NSSRPKGDFL MSNKIHALIE YDNTVIADKA VEKLNDERNW RKGLRVRLLL RCSPKSVLKN RRNFDGILID DELPSYESGE DSPRLHLTES QLDNDGDDNN
401: VGGLWGKGRG KGRGRSPRSY AVGGGGRSFG IGLGVSLGIP SLGSHESSSP KTATKGPRMP DGTRGFTMGR GKPSISLSPN NL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.