Factsheet for Zm00001d032397_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG38156	Sorghum	nucleus	68.77	60.43
Os03t0566500-01	Rice	nucleus, plastid	60.29	58.04
Zm00001d018613_P004	Maize	nucleus	53.03	43.37
PGSC0003DMT400066353	Potato	nucleus	27.6	40.28
VIT_03s0063g01050.t01	Wine grape	nucleus	39.95	40.05
KRH71184	Soybean	nucleus	36.56	37.38
KRH50235	Soybean	nucleus	35.11	36.34
Solyc01g108310.2.1	Tomato	nucleus	35.35	36.32
GSMUA_Achr4P23770_001	Banana	nucleus	41.16	36.17
CDX99268	Canola	nucleus	38.5	35.81
Zm00001d019729_P001	Maize	nucleus	7.75	35.56
CDX92302	Canola	nucleus	38.01	35.44
Bra022387.1-P	Field mustard	nucleus	38.01	35.44
PGSC0003DMT400083493	Potato	nucleus	35.11	35.28
CDX82312	Canola	nucleus	36.56	35.03
CDY22991	Canola	nucleus	36.08	34.57
Bra001733.1-P	Field mustard	nucleus	37.53	33.84
Solyc10g050550.1.1	Tomato	nucleus	32.45	32.52
AT3G19090.2	Thale cress	nucleus	37.05	31.74
Zm00001d031707_P001	Maize	nucleus	29.78	28.6
Zm00001d007279_P001	Maize	nucleus	31.23	27.45
Zm00001d043418_P136	Maize	nucleus	25.42	22.83
Zm00001d023987_P001	Maize	nucleus	25.18	21.22
Zm00001d020113_P001	Maize	cytosol	15.5	16.08

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	UniProt:A0A1D6KQG5	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030529
GO:GO:1990904	InterPro:IPR000504	InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388	InterPro:La_HTH
InterPro:Lupus_La	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:ONM05003.1	PFAM:PF00076	PFAM:PF05383	PRINTS:PR00302
PFscan:PS50102	PFscan:PS50961	PANTHER:PTHR22792	PANTHER:PTHR22792:SF62	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00715	SUPFAM:SSF46785	SUPFAM:SSF54928	UniParc:UPI000220D27A	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
EnsemblPlantsGene:Zm00001d032397	EnsemblPlants:Zm00001d032397_P001	EnsemblPlants:Zm00001d032397_T001	SEG:seg	:	:

Description

La-related protein 6C

Coordinates

chr1:+:225301091..225304126

Molecular Weight (calculated)

44491.3 Da

IEP (calculated)

8.883

GRAVY (calculated)

-0.572

Length

413 amino acids

Sequence
(BLAST)

001: MAQDGRARES SSKAASAGSG GCSMPFRLNV HAREFVPVAS PLAAAAAGGG YYSPFVQLSG DGGLGTDWMN FFAEPDPTSP SSFLPDFGHC DILRATGGIN
101: GYPNPKGGAS VADIADKIVK QVEYQFSDTN LVANDFLTKI MNKDPEGYVP LSVISSWKKI KAMGVTSQLL VMALRTSDKL VVSDDGRKVR RAQPFTERHK
201: EELQCRMVIA ENLPQDSTRN SLEKIFGVIG SCSLLSFLTQ LHALIEYETS HQADRAVDKL NDERNWRKGL RVRPVLRRSP KTVARMKRPD LDHHVAASDE
301: ERVSTSDSPT ATAAAHPPDN TQQQQEEEEE DQHQHQHGGA KKPWGSRGRG RPPPHSSAHS AGAPGHSVDS LAASPRHAAQ GPRMPDGTRG FTMGRGRPAP
401: PAAPSAAAAV RVV

Best Arabidopsis Sequence Match ( AT3G19090.1 )
(BLAST)

001: MAQMQREEVE SVTTEKKRLD GGGGSSGAQA TAFKFNAQAP EFVPRSHTTA PAPQVSPVSG YFYPCFHYNG GCIGGCGGGV CGGGGTGVGT QSSDWIYVGG
101: GDPTAQHQHV HDPAAAFYIS NPAVQFPASQ NSSSSSKNLL SDDLRLKIVK QVEYQFTDMS LLANESISKH ISKDPEGYVP VSYIASTKKI KALTSNHHLV
201: SLALRSSSKL VVSEDGKKVK RTSQFTDRDR EELQGRTVVA ENLPDDHSYQ NLEKIFGVVG NVKAIRICHP PESNSSRPKG DFLMSNKIHA LIEYDNTVIA
301: DKAVEKLNDE RNWRKGLRVR LLLRCSPKSV LKNRRNFDGI LIDDELPSYE SGEDSPRLHL TESQLDNDGD DNNVGGLWGK GRGKGRGRSP RSYAVGGGGR
401: SFGIGLGVSL GIPSLGSHES SSPKTATKGP RMPDGTRGFT MGRGKPSISL SPNNL

Arabidopsis Description

RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLZ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.