CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71184	Soybean	nucleus	88.72	87.62
VIT_03s0063g01050.t01	Wine grape	nucleus	61.65	59.71
PGSC0003DMT400066353	Potato	nucleus	38.1	53.71
CDX99268	Canola	nucleus	55.89	50.23
Solyc01g108310.2.1	Tomato	nucleus	49.12	48.76
Bra022387.1-P	Field mustard	nucleus	53.88	48.53
CDX92302	Canola	nucleus	53.88	48.53
Bra001733.1-P	Field mustard	nucleus	54.14	47.16
CDY22991	Canola	nucleus	50.38	46.64
CDX82312	Canola	nucleus	50.38	46.64
PGSC0003DMT400083493	Potato	nucleus	47.62	46.23
AT3G19090.2	Thale cress	nucleus	54.89	45.44
Solyc10g050550.1.1	Tomato	nucleus	45.11	43.69
Os07t0102500-01	Rice	nucleus	45.86	41.78
TraesCS2B01G285700.1	Wheat	nucleus	45.61	40.81
TraesCS2A01G256900.1	Wheat	nucleus	46.12	40.8
TraesCS2D01G265900.1	Wheat	nucleus	45.61	40.72
GSMUA_Achr4P23770_001	Banana	nucleus	46.87	39.79
Os03t0566500-01	Rice	nucleus, plastid	42.61	39.63
Zm00001d018613_P004	Maize	nucleus	46.87	37.03
EER97821	Sorghum	nucleus	46.12	35.38
Zm00001d032397_P001	Maize	nucleus	36.34	35.11
KXG38156	Sorghum	nucleus	40.6	34.47
KRG97304	Soybean	nucleus	37.34	31.84
KRH69036	Soybean	nucleus	37.59	31.51
KRH11196	Soybean	nucleus	30.33	29.88
KRH21060	Soybean	nucleus	28.82	28.75

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	EMBL:ACUP02004672	InterPro:Ataxin-2_C	EnsemblPlantsGene:GLYMA_07G209600
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030529	GO:GO:1990904	UniProt:I1KLX1	InterPro:IPR000504	InterPro:IPR006630
InterPro:IPR012677	InterPro:IPR036388	EnsemblPlants:KRH50235	ProteinID:KRH50235	ProteinID:KRH50235.1	InterPro:La_HTH
InterPro:La_like_plant_RRM	InterPro:Lupus_La	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF05383	PFAM:PF07145
PRINTS:PR00302	PFscan:PS50102	PFscan:PS50961	PANTHER:PTHR22792	PANTHER:PTHR22792:SF62	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SMART:SM00715	SUPFAM:SSF46785	SUPFAM:SSF54928	UniParc:UPI00023384C2
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:38037201..38042829

Molecular Weight (calculated)

44650.5 Da

IEP (calculated)

8.867

GRAVY (calculated)

-0.799

Length

399 amino acids

Sequence
(BLAST)

001: MAQAQPEERI HENPEKETQE TGNSSFKFNA QAPEFVPRSQ IQMPVSGYFY PYFQILGGSG ESDWFFVGDQ DPSCLIPTAN AALPNSSKNI LTPDLQQKIV
101: KQVEYQFSDM SLLANESFHK QINKDPEGYV PITVIASTKK VKSLVSNINM LTQAIRSSSK LVLSVDGKKV KRKHPYTERE KEDLQSRTVV AENLPDDHSH
201: QNLQKIFGMV GSVKTIRICH PQEPNSSRPK SDFFVSNKLH ALVEYETSDI AEKAAEKLND ERNWRKGMRV RMFVRCSPKS VLKSRKSEFD GYLDDDEMLN
301: SESVEDSSPY HSNNAELFDT NVDENCKKGW ASRGRGKGRG RTQGRGLLAP PSQSSSTILC DAHTKPNTKG PKMPDGTRGF TMGRGKPISP SSQVTSPKE

Best Arabidopsis Sequence Match ( AT3G19090.1 )
(BLAST)

001: MAQMQREEVE SVTTEKKRLD GGGGSSGAQA TAFKFNAQAP EFVPRSHTTA PAPQVSPVSG YFYPCFHYNG GCIGGCGGGV CGGGGTGVGT QSSDWIYVGG
101: GDPTAQHQHV HDPAAAFYIS NPAVQFPASQ NSSSSSKNLL SDDLRLKIVK QVEYQFTDMS LLANESISKH ISKDPEGYVP VSYIASTKKI KALTSNHHLV
201: SLALRSSSKL VVSEDGKKVK RTSQFTDRDR EELQGRTVVA ENLPDDHSYQ NLEKIFGVVG NVKAIRICHP PESNSSRPKG DFLMSNKIHA LIEYDNTVIA
301: DKAVEKLNDE RNWRKGLRVR LLLRCSPKSV LKNRRNFDGI LIDDELPSYE SGEDSPRLHL TESQLDNDGD DNNVGGLWGK GRGKGRGRSP RSYAVGGGGR
401: SFGIGLGVSL GIPSLGSHES SSPKTATKGP RMPDGTRGFT MGRGKPSISL SPNNL

Arabidopsis Description

RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLZ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.