Factsheet for Os07t0102500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G256900.1	Wheat	nucleus	61.64	59.87
TraesCS2B01G285700.1	Wheat	nucleus	60.5	59.42
TraesCS2D01G265900.1	Wheat	nucleus	60.5	59.28
Zm00001d018613_P004	Maize	nucleus	62.79	54.46
Os03t0566500-01	Rice	nucleus, plastid	50.91	51.98
EER97821	Sorghum	nucleus	61.42	51.73
PGSC0003DMT400066353	Potato	nucleus	31.51	48.76
KRH71184	Soybean	nucleus	42.47	46.04
KRH50235	Soybean	nucleus	41.78	45.86
VIT_03s0063g01050.t01	Wine grape	nucleus	40.41	42.96
GSMUA_Achr4P23770_001	Banana	nucleus	45.89	42.77
Solyc01g108310.2.1	Tomato	nucleus	38.58	42.04
CDX99268	Canola	nucleus	41.1	40.54
CDX92302	Canola	nucleus	40.87	40.41
Bra022387.1-P	Field mustard	nucleus	40.87	40.41
CDX82312	Canola	nucleus	39.73	40.37
PGSC0003DMT400083493	Potato	nucleus	37.67	40.15
CDY22991	Canola	nucleus	39.5	40.14
Bra001733.1-P	Field mustard	nucleus	40.64	38.86
Solyc10g050550.1.1	Tomato	nucleus	36.53	38.84
Os11t0248200-01	Rice	nucleus, plasma membrane	29.68	36.72
AT3G19090.2	Thale cress	nucleus	40.41	36.72
Os08t0542900-01	Rice	nucleus	32.88	33.72
Os12t0225100-01	Rice	nucleus	15.07	27.16

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:4342177	EMBL:AK100327	EMBL:AK100796
ProteinID:BAD31839.1	ProteinID:BAF20598.1	ProteinID:BAS99690.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:1990904	InterPro:IPR000504
InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388	InterPro:La_HTH	InterPro:La_like_plant_RRM	InterPro:Lupus_La
InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os07g0102500	EnsemblPlants:Os07t0102500-01	PFAM:PF00076	PFAM:PF05383	PRINTS:PR00302
PFscan:PS50102	PFscan:PS50961	PANTHER:PTHR22792	PANTHER:PTHR22792:SF62	UniProt:Q69L83	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SMART:SM00715	SUPFAM:SSF46785	SUPFAM:SSF54928	UniParc:UPI00001BF75B
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_015646283.1	SEG:seg	:	:

Description

Lupus La protein family protein. (Os07t0102500-01)

Coordinates

chr7:-:154906..158601

Molecular Weight (calculated)

47706.5 Da

IEP (calculated)

10.207

GRAVY (calculated)

-0.614

Length

438 amino acids

Sequence
(BLAST)

001: MATAQQESIS SGGDGNNNNN KQVAVVVVEE ASTPSSAFKF NVHAPEFVPA MSPTASPMSA PAGSSSFYSP FGLHVQPDHW SFFHDHEPVF FMPDFKFAAA
101: AAASAQPKPT SAADMPHKIV KQVEYQFSDI NLVANEFLLK IMNKDSEGYV PLSVIASWKK IKSLGATNQM LVKALRTSTK LIVSDDGKKV RRRQPFTEKH
201: KEELQSRMII AENLPEDSSR NSLEKIFGVV GSVKNIKMCH PQEPSTARAS KSDTLVSNKM HALVEYESSQ QAEKAVEKLN DERNWRKGLR VRTVLRRSPK
301: SVMRLKRTEF DLNSDDEQSP MSSDLSPTAT ATAAELSAEA AGHDQGGEQQ MMNSSKKGGG WARGGRGKLQ VAAPHSPQSA PAGSVGHFEP ASPRHKLPAS
401: PRHKCPSSPR QPPPHAHGPR MPDGTRGFTM GRGKPLLV

Best Arabidopsis Sequence Match ( AT3G19090.1 )
(BLAST)

001: MAQMQREEVE SVTTEKKRLD GGGGSSGAQA TAFKFNAQAP EFVPRSHTTA PAPQVSPVSG YFYPCFHYNG GCIGGCGGGV CGGGGTGVGT QSSDWIYVGG
101: GDPTAQHQHV HDPAAAFYIS NPAVQFPASQ NSSSSSKNLL SDDLRLKIVK QVEYQFTDMS LLANESISKH ISKDPEGYVP VSYIASTKKI KALTSNHHLV
201: SLALRSSSKL VVSEDGKKVK RTSQFTDRDR EELQGRTVVA ENLPDDHSYQ NLEKIFGVVG NVKAIRICHP PESNSSRPKG DFLMSNKIHA LIEYDNTVIA
301: DKAVEKLNDE RNWRKGLRVR LLLRCSPKSV LKNRRNFDGI LIDDELPSYE SGEDSPRLHL TESQLDNDGD DNNVGGLWGK GRGKGRGRSP RSYAVGGGGR
401: SFGIGLGVSL GIPSLGSHES SSPKTATKGP RMPDGTRGFT MGRGKPSISL SPNNL

Arabidopsis Description

RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLZ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.