Factsheet for TraesCS2D01G265900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G285700.1	Wheat	nucleus	98.66	98.88
TraesCS2A01G256900.1	Wheat	nucleus	96.42	95.57
Os07t0102500-01	Rice	nucleus	59.28	60.5
Zm00001d018613_P004	Maize	nucleus	65.1	57.62
EER97821	Sorghum	nucleus	65.32	56.15
PGSC0003DMT400066353	Potato	nucleus	31.32	49.47
KRH71184	Soybean	nucleus	42.06	46.53
KRH50235	Soybean	nucleus	40.72	45.61
VIT_03s0063g01050.t01	Wine grape	nucleus	41.61	45.15
GSMUA_Achr4P23770_001	Banana	nucleus	45.86	43.62
Solyc01g108310.2.1	Tomato	nucleus	39.15	43.53
PGSC0003DMT400083493	Potato	nucleus	37.14	40.39
CDX92302	Canola	nucleus	39.15	39.5
Bra022387.1-P	Field mustard	nucleus	39.15	39.5
CDX99268	Canola	nucleus	38.48	38.74
Solyc10g050550.1.1	Tomato	nucleus	34.9	37.86
CDX82312	Canola	nucleus	36.24	37.59
CDY22991	Canola	nucleus	36.02	37.35
Bra001733.1-P	Field mustard	nucleus	38.26	37.34
TraesCS7D01G269000.1	Wheat	nucleus	31.32	35.62
AT3G19090.2	Thale cress	nucleus	37.81	35.06
TraesCS4D01G084200.1	Wheat	nucleus	34.45	31.95
TraesCS5D01G126900.3	Wheat	nucleus	31.77	30.54
TraesCS3D01G293700.1	Wheat	nucleus	28.64	26.56

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:1990904	InterPro:IPR000504
InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388	InterPro:La_HTH	InterPro:La_like_plant_RRM	InterPro:Lupus_La
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF05383	PRINTS:PR00302	PFscan:PS50102	PFscan:PS50961
PANTHER:PTHR22792	PANTHER:PTHR22792:SF62	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM00715
SUPFAM:SSF46785	SUPFAM:SSF54928	EnsemblPlantsGene:TraesCS2D01G265900	EnsemblPlants:TraesCS2D01G265900.1	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
TIGR:cd08033	TIGR:cd12288	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2D:+:324595094..324597370

Molecular Weight (calculated)

48234.1 Da

IEP (calculated)

10.200

GRAVY (calculated)

-0.566

Length

447 amino acids

Sequence
(BLAST)

001: MAAAKESSPD PDASATAAAA PPTPMSAPAS FKFNVHAPEF VPMSPTATPM SAPAGGYYSP FLQMQPAPDW SFLHDHEPVF FMPDFAHAKF AAAAAAASNS
101: AQAKGTGGGG ADVAQKIVKQ VEYQFSDINL VANEFLLKIM NKDSEGYVPL SVISSWKKIK SLGATNQMLV KALRTSTKLI VSDDGKKVRR RQPFTEKHKE
201: ELQSRMIIAE NLPEDSSRNS LEKVFSVVGS VKNIKICHPQ EPSSARASKS DTLVSNKMHA LVEYETSQQA EKAVEKLNDE RNWRKGLRVR TVLRRSPKSV
301: MRLKRPDFDH YAGSDDESPH SQVSSDSPTS EAIHSPEAHP EDHQSGAKKG WARGRGKLHI VAPHSPQSAP AGAVGHFDTS SPRQASQKCP LSPRQVSQKC
401: PFSPRQPPQG PRMPDGTRGF TMGRGKPAAS SVAARTVAAP PPAPVLV

Best Arabidopsis Sequence Match ( AT3G19090.1 )
(BLAST)

001: MAQMQREEVE SVTTEKKRLD GGGGSSGAQA TAFKFNAQAP EFVPRSHTTA PAPQVSPVSG YFYPCFHYNG GCIGGCGGGV CGGGGTGVGT QSSDWIYVGG
101: GDPTAQHQHV HDPAAAFYIS NPAVQFPASQ NSSSSSKNLL SDDLRLKIVK QVEYQFTDMS LLANESISKH ISKDPEGYVP VSYIASTKKI KALTSNHHLV
201: SLALRSSSKL VVSEDGKKVK RTSQFTDRDR EELQGRTVVA ENLPDDHSYQ NLEKIFGVVG NVKAIRICHP PESNSSRPKG DFLMSNKIHA LIEYDNTVIA
301: DKAVEKLNDE RNWRKGLRVR LLLRCSPKSV LKNRRNFDGI LIDDELPSYE SGEDSPRLHL TESQLDNDGD DNNVGGLWGK GRGKGRGRSP RSYAVGGGGR
401: SFGIGLGVSL GIPSLGSHES SSPKTATKGP RMPDGTRGFT MGRGKPSISL SPNNL

Arabidopsis Description

RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLZ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.